People

Michelle started her group at the Université de Sherbrooke in 2011 where she is currently a full professor in the Department of Biochemistry and Functional Genomics and a member of the RiboClub. The characterization of the snoRNome has been the main focus of her group since its beginning, including elaborating diverse tools for the study of snoRNAs and the analysis their regulation, evolution, interactions and functions. Her group is also interested in studying different aspects of the transcriptome and its deregulation in health and disease. Her group is involved in collaborations with many groups. She is funded by CIHR, NSERC, FRQNT and holds a senior professorship from the FRQS.

Our group focuses on understanding the molecular events underlying the progression of early breast lesions. We often use different types of high-throughput profiling methods to provide comprehensive molecular overviews of the lesion, its microenvironment and the patient systemic response. We also develop new methods to subject cells and tissues to multiple genetic interventions simultaneously. The profiling information is used to build computational tools to understand higher-order interactions in complex biological systems and pathways. Our goal is to develop tools for end-points with clinical relevance and to use these tools to characterize events in tumoral progression.

Mike Wu is a recent graduate from Langara College with a Bachelor of Science in BIoinformatics. He is now doing his graduate studies at UBC in bioinformatics (specialized in machine learning in metabolomics). Mike has hands-on experience in a couple of bioinformatics projects, including single-cell RNA seq pipeline, metagenomics assembly and annotation, and blastInR package development, where R programming is mainly used for app development, data analysis, and pipeline construction.

Mira is a principal research officer and team led at the Digital Technologies RC and Adjunct Professor in Biochemistry, Microbiology and Immunology at University of Ottawa. Her main interests are in the application of ML and data mining life sciences with particular interest in metabolomics and lipidomics and applications in the diseases of aging and neurodegeneration. She was involved in the development of bioinformatics solutions (made available through https://complimet.ca) as well as utilization of computational biology for biomarker discovery and simulation of biological systems.

Mohamed is a Computational Systems Biologist and Principal Scientist leading the Bioinformatics and Systems Biology Lab (BSBL) at the Vaccine and Infectious Disease Organization (VIDO), University of Saskatchewan. He received his MSc and PhD in Computational Systems Biology from Keio University (Tokyo, Japan) and completed his postdoctoral training in bioinformatics at Kyoto University and the University of Toronto. Mohamed’s interdisciplinary research profile bridges biology, computer science, and public health.

The focus of Dr. Langille’s research is to better understand human-microbial interactions and how that can be used to improve human health. This includes leveraging novel genomic technologies and developing improved bioinformatic methods to process and integrate multi-omic data to aid in biological interpretation. These discoveries will hopefully lead to novel applications for diagnosis and therapeutics.

Nadia Tahiri received her M.Sc. and Ph.D. degrees in Computer Science from the University of Quebec at Montreal. She is currently an Assistant Professor in the Department of Computer Science at the University of Sherbrooke. Her research interests include evolution, phylogenetic tree, clustering, classification, computational biology, and biogeography, and consensus tree/supertree.

Nicholas Provart is a professor of plant cyberinfrastructure and systems biology and is chair of the Department of Cell & Systems Biology at the University of Toronto. Currently his Bio-Analytic Resource (BAR) at bar.utoronto.ca, comprising tools for coexpression analysis of publicly-available gene expression data, cis-element prediction, identifying molecular markers, generating “electronic fluorescent pictographic” (eFP) representations of gene expression patterns, and exploring protein-protein interactions in Arabidopsis and other plants, receives 4M page views a month by researchers worldwide. He is one of the founding members of the International Arabidopsis Informatics Consortium, is president of the Multinational Arabidopsis Steering Committee, and is teaching five MOOCs on bioinformatic methods, plant bioinformatics, and data visualization for genome biology on Coursera.org.

Nikta is a PhD student in the Medical Biophysics program at the University of Toronto. She completed her Bachelor of Science in Microbiology and her Master of Science in Bioinformatics. For her MSc thesis, Nikta worked on developing supervised algorithms for classifying cancer-specific somatic mutations. Her research interests include application of machine learning algorithms in pharmacogenomic analysis, cancer diagnosis and personalized medicine.

The goal of Professor Basu’s research is to design, validate, and apply innovative and sustainable approaches (focused on toxicogenomics) to address the most pressing societal concerns over toxic chemicals in our environment. Professor Basu’s research is multidisciplinary (bridges environmental quality and human health), inter-sectoral (most projects driven by stakeholder needs, notably government and communities), and driven by environmental justice concerns.

Dr. Nisha Puthiyedth is an Assistant Professor at the Department of Computing Science at Thompson Rivers University (TRU), Canada. Her expertise lies in bioinformatics, computational genomics, and applied machine learning, with a focus on microbiome analysis, antimicrobial resistance, and genotype–phenotype relationships. She develops data-driven computational pipelines for analyzing large-scale biological datasets and works closely with interdisciplinary teams and industry collaborators to translate research findings into practical applications. https://sites.google.com/view/biomllab/ https://kamino.tru.ca/experts/home/main/bio.php?id=nputhiyedth