Pathway and Network Analysis of -omics Data (2014)

Course Objectives

A poster announcing this workshop can be found here

Many research programs often slow or stall after generating a gene list. The CBW has expanded to a 2.5-day course covering the bioinformatics concepts and tools available for annotating and determining functional enrichment of a gene list and analyzing networks. The workshop is focused on the principles and concepts required for analyzing and conducting pathway analysis on a gene list from any organism, although focus will be on human and model Eukaryotic organisms. Specifically, we will focus on 1) getting more information about a gene list, 2) finding out how a set of genes is connected, 3) discovering what's enriched in a gene list (and using it for hypothesis generation) and 4) extending or refining a gene list. An analysis flow chart will be developed throughout the course.

Course Material

Open Access LogoCanadian Bioinformatics Workshops promotes open access. Past workshop content is available under a Creative Commons License.

Module 1 - Brief introduction to gene lists (2014) (Faculty: Gary Bader)

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Module 2 - Finding over-represented pathways in gene lists (2014) (Faculty: Quaid Morris)

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Module 3 - Regulatory Network Analysis (2014) (Faculty: Michael Hoffman)

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Module 4 - Pathway and Network Analysis (2014) (Faculty: Lincoln Stein)

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Module 5 - Network Visualization (2014) (Faculty: Gary Bader)

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Module 6 - Gene Function Prediction (2014) (Faculty: Quaid Morris)

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