Pathway and Network Analysis of -omics Data (2013)

Course Objectives

Advertising poster for this workshop is here

Many research programs often slow or stall after generating a gene list. The CBW has expanded to a 3-day course covering the bioinformatics concepts and tools available for annotating and determining functional enrichment of a gene list and analyzing networks. The workshop is focused on the principles and concepts required for analyzing and conducting pathway analysis on a gene list from any organism, although focus will be on human and model Eukaryotic organisms. Specifically, we will focus on 1) getting more information about a gene list, 2) finding out how a set of genes is connected, 3) discovering what's enriched in a gene list (and using it for hypothesis generation) and 4) extending or refining a gene list. An analysis flow chart will be developed throughout the course.

Course Material

Open Access LogoCanadian Bioinformatics Workshops promotes open access. Past workshop content is available under a Creative Commons License.

Module 1 - Brief introduction to gene lists (2013) (Faculty: Gary Bader)

application/pdf iconPDF (3MB) | application/vnd.ms-powerpoint iconPPT (3MB) | video/mp4 iconMP4 (144MB)

Module 2 - Regulatory Network Analysis (2013) (Faculty: Wyeth Wasserman)

application/pdf iconPDF (6MB) | video/mp4 iconMP4 (392MB)

Module 3 - Finding over-represented pathways in gene lists (2013) (Faculty: Quaid Morris)

application/pdf iconPDF (2MB) | application/vnd.openxmlformats-officedocument.presentationml.presentation iconPPTX (2MB) | video/mp4 iconMP4 (317MB)

Module 4 - Pathway and Network Analysis (2013) (Faculty: Lincoln Stein)

application/pdf iconPDF (10MB) | application/vnd.openxmlformats-officedocument.presentationml.presentation iconPPTX (12MB) | video/mp4 iconMP4 (219MB)

Module 5 - Network Visualization (2013) (Faculty: Gary Bader)

application/pdf iconPDF (16MB) | application/vnd.openxmlformats-officedocument.presentationml.presentation iconPPT (17MB) | video/mp4 iconMP4 (571MB)

Module 6 - Gene Function Prediction (2013) (Faculty: Quaid Morris)

application/pdf iconPDF (4MB) | application/vnd.ms-powerpoint iconPPTX (6MB) | video/mp4 iconMP4 (184MB)