Related Links for PDBSiteScanTool Content

Found 29 links

Displaying 15 links

BSDDDatabase Content

Share This Link

BSDD (Biomolecules Segment Display Device) searches for and displays user defined sequence motifs in known protein structures. This web based tool incorporates the graphics package of RASMOL for visualization.

This content is being maintained by kitty.pillai.

CRASPTool Content

Share This Link

Correlation analysis of the amino acid substitutions in protein sequences (CRASP) takes multiple alignments of amino acid sequences as input, and detects coordinated residue substitutions. These substitutions may suggest dependent evolution of functionally related pairs of amino acids.

Institute of Enzymology ServersTool Content

Share This Link

A set of severs developed by the Institute of Enzymology that includes tools for transmembrane protein structure prediction and structural analyses.

MatchTool Content

Share This Link

Match is a weight matrix-based tool which searches for putative transcription factor binding sites (TFBS) in DNA sequences. Registration at the site is free and is required to use Match.

MATRASTool Content

Share This Link

MATRAS is a resource for comparing protein three dimensional (3D) structures. Users can compare protein 3D structures using pairwise alignments, multiple alignments, or by a comparing against a library of known structures.

MolSurferTool Content

Share This Link

Molsurfer is a graphical tool that links a 2D projection of a macromolecular interface to a 3D view of the macromolecular structures. It can be used to study protein-protein and protein-DNA/RNA interfaces.

PBSwordTool Content

Share This Link

PBSword is a web server designed for efficient and accurate comparisons and searches of geometrically similar protein-protein binding sites from a large-scale database.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

PepBuildTool Content

Share This Link

PepBuild is a tool that facilitates the construction, from known sequence and secondary/tertiary structures, of capped or uncapped proteins. The output generated is in PDB format.

pevoSOARTool Content

Share This Link

pvSOAR takes a PDB ID or structure file as input, and searches for other proteins with surface regions that are similar to the query structure.

PhosfinderTool Content

Share This Link

Phosfinder uses a structural comparison algorithm to identify phosphate binding sites in protein structures. It scans a query structure in PDB format against a set of known 3D phosphate binding motifs and outputs a visual display of the predicted binding sites on the query protein structure.

Associated Tag Cloud