Links tagged with 'oligonucleotides'

Found 12 links

Displaying 12 links

dnaMATETool Content

Share This Link

dnaMATE calculates a consensus melting temperature (Tm) for any given short DNA sequence (16-30 nts) based on three independent thermodynamic data tables. Stand-alone version available; list of other melting temperature calculation servers also provided.

IDT SciToolsTool Content

Share This Link

IDT SciTools is a suite of online tools for the analysis and design of DNA and RNA oligomers. Tools include those for selection of PCR primers, antisense oligonucleotides, or sequences for RNA interference, as well as tools for calculation of secondary structures.

OligoCalcTool Content

Share This Link

OligoCalc calculates the physical properties of single- and double-stranded DNA and RNA molecules including melting temperature (multiple methods), concentration, molecular weight, and absorbance at 260 nanometers. OligoCalc can also account for 5’ and 3’ chemical modifications and predict potential hairpin loop formation.

links directory index: 152
TitlePublication YearGoogle Scholar Citation Count
OligoCalc: an online oligonucleotide properties calculator2007152

OligoWalkTool Content

Share This Link

OligoWalk is an online sever for designing efficient siRNA targeting a given mRNA sequence. By calculating thermodynamic features of sense-antisense hybidization, OligoWalk predicts the free energy changes of oligonucleotides binding to a target RNA.

ProteinCCDTool Content

Share This Link

Protein Crystallographic Construct Design (Protein CCD) is a meta-web server that facilitates the design of several truncated constructs of a protein using experimental data or sequence analysis tools. From input DNA sequence, information on disorder, coiled coils, transmembrane segments, domains and domain linkers are collected from secondary structure prediction servers. Users can select starts and ends for protein constructs and ProteinCCD wil design suitable PCR primers.

QGRS MapperTool Content

Share This Link

Quadruplex forming G-Rich Sequences (QGRS) Mapper searches nucleotide sequences for the presence of G-quartet motifs. QGRS Mapper allows you to view the distribution and composition of QGRS in the context of alternatively spliced isoforms of your gene.

siRNA Selection ServerTool Content

Share This Link

Server aiding the design of short interfering RNAs (siRNAs) by providing information on stability, SNPs and specificity of a potential siRNA.

This content is being maintained by lewitter.

Zinc Finger ToolsTool Content

Share This Link

Zinc Finger Tools provides several tools for selecting zinc finger protein target sites and for designing the proteins that will target them.

Associated Tag Cloud