Localization and Targeting

This section contains links to tools related to predicting subcellular localization, the presence of transmembrane regions, and/or targeting including the prediction of signal peptides.

Found 48 links

Displaying 15 links

Bioinformatics ToolkitTool Content

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This Toolkit is a collection of a wide range of tools and links for sequence analysis, function, and structure prediction. This resource offers convienent web interfaces for many freely available tools.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

BOMPTool Content

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The beta-barrel Outer Membrane protein Predictor (BOMP) takes one or more fasta-formatted polypeptide sequences from Gram-negative bacteria as input and predicts whether or not they are beta-barrel integral outer membrane proteins.

BPROMPTTool Content

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Bayesian PRediction Of Membrane Protein Topology (BPROMPT) uses a Bayesian Belief Network to combine the results of other membrane protein prediction methods for a protein sequence.

links directory index: 37
TitlePublication YearGoogle Scholar Citation Count
BPROMPT: A consensus server for membrane protein prediction200337

ESLpredTool Content

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ESLpred is a tool for predicting subcellular localization of proteins using support vector machines. The predictions are based on dipeptide and amino acid composition, and physico-chemical properties.

This content is being maintained by raghavagps.

GeneTrailTool Content

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GeneTrail analyzes gene sets for statistically significant accumulations of genes belonging to functional categories. Two common statistical approaches are implemented including: Over-Representation Analysis (ORA) for comparing a reference set of genes to a test set; and, Gene Set Enrichment Analysis (GSEA) for scoring sorted lists of genes.

links directory index: 112
TitlePublication YearGoogle Scholar Citation Count
GeneTrail--advanced gene set enrichment analysis2007112

Institute of Enzymology ServersTool Content

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A set of severs developed by the Institute of Enzymology that includes tools for transmembrane protein structure prediction and structural analyses.

LOCATEDatabase Content

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LOCATE is a curated database that houses data describing the membrane organization and subcellular localization of mouse proteins.

links directory index: 64
TitlePublication YearGoogle Scholar Citation Count
LOCATE: a mouse protein subcellular localization database200664

LocTree 3Tool Content

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LocTree3 is a web server for protein subcellular localization prediction.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

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