Carbohydrates

Tools for dealing with the bioinformatics of carbohydrate structures

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Displaying 13 links

EuroCarbDBDatabase Content

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EuroCarbDB is a repository of carbohydrate structures, experimental evidence, and carbohydrate-oriented research and analysis tools.

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GlycoFragmentTool Content

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GlycoFragment is a tool that takes the sequence of a carbohydrate structure as input, and calculates all theoretically possible fragments which are likely to occur in mass spectra.

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GlycomeDBDatabase Content

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GlycomeDB integrates the structural and taxonomic data of all major public carbohydrate databases, as well as carbohydrates contained in the Protein Data Bank. The database is a unified resource for carbohydrate structures. GlycomeDB retains the links to the original databases and is updated at weekly intervals with the newest structures available from the source databases.

links directory index: 2
TitlePublication YearGoogle Scholar Citation Count
GlycomeDB--a unified database for carbohydrate structures20112

GlycoSearchMSTool Content

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GlycoSearchMS takes a list of mass spectra peak values as input and searches for matches with the calculated fragments of SweetDB structures.

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GlycoViewerTool Content

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The GlycoViewer is a web-based tool that can visualize, summarize and compare sets of gylcan structures.

GlyNest and CASPERTool Content

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GlyNest and CASPER are two independent services, available through this common interface, for predicting NMR spectra given a glycan chemical structure.

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GlyprotTool Content

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Glyprot is a tool for predicting and modelling all potential N-glycosylation sites in a given 3D structure.

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links directory index: 62
TitlePublication YearGoogle Scholar Citation Count
GlyProt: in silico glycosylation of proteins200562

HIV N-linked Glycosylation Site AnalyzerTool Content

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HIV N-linked Glycosylation Site Analyzer facilitates the study of HIV diversity by tracking gp120 N-linked glycosylation sites in HIV. The web server provides an automated platform for mapping and comparing variable loop N-glycosylation sites across populations of HIV-1 sequences.

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KCaMTool Content

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The KEGG Carbohydrate Matcher (KCaM) takes glycan structures as input and returns a list of similar glycan structures using a tree-structure alignment algorithm.

MonosaccharideDBDatabase Content

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MonosaccharideDB is a reference resource for monosaccharide notation.

This content is being maintained by luetteke.

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