Yeast

These links include resources specific to yeast such as gene indices and genome databases.

Found 31 links

Displaying 15 links

AHMIITool Content

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Agent to Help Microbial Information Integration (AHMII) offers a search engine for particular strains present in culture collections and databases in bacteria, fungi, yeasts and cell lines.

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TitlePublication YearGoogle Scholar Citation Count
AHMII: Agent to Help Microbial Information Integration.20030

E-RNAiTool Content

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E-RNAi is a tool for designing and evaluating dsRNA constructs suitable for RNAi experiments in 12 organisms including Drosophila, C. elegans, human and other emerging model organisms. E-RNAi also facilitates the design of secondary RNAi reagents for validation experiments, evaluation of pooled siRNA reagents and batch design.

GeneMANIATool Content

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GeneMANIA is web interface for generating hypotheses about gene function, analyzing gene lists and prioritizing genes for functional assays. Users input a query list for extension and weighting with functionally similar genes. Six organisms are supported.

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IMPTool Content

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Integrative Multi-species Prediction (IMP) is a webserver that enables biologists to analyze their experimental results in the functional context of gene networks from multiple organisms.

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MIPSDatabase Content

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Munich Information Centre for Protein Sequences projects include: fungal genome analysis, plant genome bioinformatics, structural genomics, proteomics and genome annotation. Projects and databases include: CYGD, MNCDB, NGFN, MPPI, SIMAP, QUIPOS, MATDB, MOsDB, SPUTNIK, and PEDANT.

MYBSTool Content

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MYBS (Mining Yeast Binding Sites) is a tool for mapping Transcription factors (TFs) and their binding sites (TFBSs) that integrates both experimentally verified (ChIP-chip data) and predicted position weight matrixes (PWMs) from several databases.

NetAlignerTool Content

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NetAligner is a network alignment tool that allows the identification of conserved protein complexes and pathways across organisms. Predictions to fill missing interaction networks is based on likely conserved interactions based on evolutionary distance. Seven model organisms are included.

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OriDBDatabase Content

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DNA origin of replication database: contains genome-wide mapping studies. Databases available for yeast Saccharomyces cervisiae and S. pombe.

PhenoMDatabase Content

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Phenomics of yeast Mutants (PhenoM): contains quantitative measurements of 1,909,914 cells and 78,194 morphological images for 775 temperature-sensitive mutants spanning 491 different essential genes in permissive temperature (26 C) and restrictive temperature (32 C).

PomBaseDatabase Content

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Comprehensive online database for fission yeast. Contains annotation of genomic sequence and features, comprehensive manual literature curation, genome-wide data sets, and supports sophisticated user-defined queries.

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TitlePublication YearGoogle Scholar Citation Count
PomBase: a comprehensive online resource for fission yeast20122

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