Worm

This section contains links to genome resources and databases for worms including the nematode, C. elegans.

Found 17 links

Displaying 15 links

959 Nematode GenomesDatabase Content

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A community-curated semantic wiki to coordinate the sequencing efforts of individual labs to collectively sequence 959 genomes spanning the phylum Nematoda. The main goal of the wiki is to track sequencing projects that have been proposed, are in progress, or have been completed.

C. elegans Gene Knockout ConsortiumResource Content

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Worldwide consortium whose ultimate goal is to produce null alleles of all known genes in the C. elegans genome; submit your gene to the knockout list.

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TitlePublication YearGoogle Scholar Citation Count

DIANA-microT v5.0Tool Content

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The DIANA-microT web server predicts targets for miRNAs and provides functional information on the predicted miRNA:target gene interaction from various online biological resources. Updates enable the association of miRNAs to diseases through bibliographic analysis and connection to the UCSC genome browser. Updates include sophisticated workflows.

Ensembl C.elegans Genome BrowserDatabase Content

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Access the data through the Ensembl user interface (both for visualisation and data mining) to provide cross-species integration throughout Ensembl\'s comparative genomics resources.

links directory index: 865
TitlePublication YearGoogle Scholar Citation Count
The Ensembl genome database project.2002865

GeneMANIATool Content

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GeneMANIA is web interface for generating hypotheses about gene function, analyzing gene lists and prioritizing genes for functional assays. Users input a query list for extension and weighting with functionally similar genes. Six organisms are supported.

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IMPTool Content

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Integrative Multi-species Prediction (IMP) is a webserver that enables biologists to analyze their experimental results in the functional context of gene networks from multiple organisms.

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TitlePublication YearGoogle Scholar Citation Count

Modular Subnetwork Biomarker IdentificationTool Content

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Inferring the functions of longevity genes with modular subnetwork biomarkers of Caenorhabditis elegans aging. A method where the biomarkers are networks of genes selected based on age-dependent activity and a graph-theoretic property called modularity. These modular biomarkers are applied to assign novel aging-related functions to poorly characterized longevity genes.

Nematode.netDatabase Content

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Publicly available resource for studying nematodes. Next-generation data has been added to various data-mining portals. Features for data analysis and comparative genomics.

NetAlignerTool Content

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NetAligner is a network alignment tool that allows the identification of conserved protein complexes and pathways across organisms. Predictions to fill missing interaction networks is based on likely conserved interactions based on evolutionary distance. Seven model organisms are included.

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TitlePublication YearGoogle Scholar Citation Count

SteinerNetTool Content

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SteinerNet is a webserver for the integration of transcriptional, proteomic and interactome data to reveal regulatory and signalling networks.

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UCSC C. briggsae Genome Browser GatewayTool Content

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Provides a rapid and reliable display of any requested portion of the C. briggsae genome at any scale, together with dozens of aligned annotation tracks.

links directory index: 1185
TitlePublication YearGoogle Scholar Citation Count
The UCSC Genome Browser Database20031185

UCSC C. elegans Genome Browser GatewayTool Content

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Provides a rapid and reliable display of any requested portion of the C. elegans genome at any scale, together with dozens of aligned annotation tracks.

links directory index: 1185
TitlePublication YearGoogle Scholar Citation Count
The UCSC Genome Browser Database20031185

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