Other Vertebrates

Links in this section include genomic databases and resources specific to other vertebrates.

Found 15 links

Displaying 15 links

Cancer Genome Anatomy ProjectTool Content

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Goal is to determine the gene expression profiles of normal, precancer, and cancer cells; resources for human and mouse include ESTs, gene expression patterns, SNPs, cluster assemblies, cytogenetic information, and tools to query and analyze the data.

CUBE-DBDatabase Content

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A database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families, but based on all currently available vertebrate genomes.

This content is being maintained by ivanam.

Ensembl Human Genome BrowserDatabase Content

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Website, MySQL server and perl API access to software system which produces and maintains automatic annotation on eukaryotic genomes; uses NCBI assembly.

links directory index: 865
TitlePublication YearGoogle Scholar Citation Count
The Ensembl genome database project.2002865

HomozygosityMapperTool Content

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A web base approach to homozygosity mapping. Users upload SNP genotype or sequencing files for analysis and detection of long homozygous stretches between affected individuals. Human, rodent and other mammals are mappable.

This content is being maintained by dominik.

Newt-omicsDatabase Content

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Database of data from the newt Notophthalmus viridescens. Newt-Omics aims to provide a comprehensive platform of expressed genes during tissue regeneration, including extensive annotations, expression data and experimentally verified peptide sequences with yet no homology to other publically available gene sequences.

PINADatabase Content

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Protein Interaction Network Analysis platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms. Moreover, it provides a variety of built-in tools to filter and analyze the network for gaining insight into the network.

links directory index: 2
TitlePublication YearGoogle Scholar Citation Count
PINA v2.0: mining interactome modules20122

TCAG: The Centre for Applied Genomics, TorontoResource Content

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The Centre for Applied Genomics is a Canadian centre for human genome and disease research. Resources include Genomic and cDNA library screening (human, mouse, dog, pig) provided free to Canadian academic researchers with a nominal clone retrieval fee. Also: Research Genetics, NIA/NIH and RIKEN cDNAs.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

TFM-ExplorerTool Content

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TFM-Explorer web server is a toolbox for the identification of putative transcription factor binding sites within a set of upstream regulatory sequences for a given set of genes. Only for human, mouse, rat, chicken and drosphila.

links directory index: 4
TitlePublication YearGoogle Scholar Citation Count
TFM-Explorer: mining cis-regulatory regions in genomes20104

The Dog Genome ProjectTool Content

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The dog genome project is a collaborative study aimed at producing a map of all of the chromosomes in dogs, which can be used to map the genes causing disease and those genes controlling morphology and behavior.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

UCSC Human Genome Browser GatewayTool Content

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Provides a rapid and reliable display of any requested portion of the human genome at any scale, together with dozens of aligned annotation tracks.

links directory index: 1185
TitlePublication YearGoogle Scholar Citation Count
The UCSC Genome Browser Database20031185

Vega Annotation BrowserTool Content

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In collaboration with the genome sequencing centres, Vega attempts to present consistent high-quality curation of finished sequence.

links directory index: 9
TitlePublication YearGoogle Scholar Citation Count
VEGA, the genome browser with a difference20059