Mouse and Rat

Resources include sequences, annotations, and comparative vertebrate genomics for mice and rats.

Found 48 links

Displaying 15 links

Allen Brain AtlasDatabase Content

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The Allen Brain Atlas (ABA) project has developed a web-based application designed to aid the intersection of neuroscience and genomics. The ABA Application enables users to access an extensive database of high resolution in situ hybridization (ISH) images from over 10,000 genes, reference atlases in both the sagittal and coronal planes, gene expression masks capturing the intensity of gene expression or signal, and the ability to search for gene expression by anatomic region.

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ARTSDatabase Content

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ARTS (Advanced Retrieval Tool for SNPs) can be used to retrieve SNP that are polymorphic between several different mouse strains to aid in the design of genome-wide SNP marker panels.

BEARRTool Content

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Batch Extraction and Analysis of cis-Regulatory Regions (BEARR) takes a list of gene identifiers (such as RefSeq and Unigene IDs), consensus patterns, and (optionally) a position weight matrix as input and returns a list of matches for the patterns in both the sense and anti-sense strands of the relevant genomic sequence. The user specifies what distance up and downstream from both the transcription start site and the 3\' terminus to look for the patterns.

Ensembl Rat Genome BrowserDatabase Content

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The Rat Genome project is an international collaboration to sequence the genome of the brown rat (Rattus norvegicus).

links directory index: 865
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The Ensembl genome database project.2002865

GeneMANIATool Content

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GeneMANIA is web interface for generating hypotheses about gene function, analyzing gene lists and prioritizing genes for functional assays. Users input a query list for extension and weighting with functionally similar genes. Six organisms are supported.

This content is being maintained by baderg.

HomozygosityMapperTool Content

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A web base approach to homozygosity mapping. Users upload SNP genotype or sequencing files for analysis and detection of long homozygous stretches between affected individuals. Human, rodent and other mammals are mappable.

This content is being maintained by dominik.

IdiographicaTool Content

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Idiographica is a general-purpose web application to build idiograms on-demand for human, mouse and rat. It allows users to generate high-quality idiograms with custom annotation according to their own genome-wide mapping/annotation data through an easy-to-use interface.

IMPTool Content

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Integrative Multi-species Prediction (IMP) is a webserver that enables biologists to analyze their experimental results in the functional context of gene networks from multiple organisms.

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LOCATEDatabase Content

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LOCATE is a curated database that houses data describing the membrane organization and subcellular localization of mouse proteins.

links directory index: 64
TitlePublication YearGoogle Scholar Citation Count
LOCATE: a mouse protein subcellular localization database200664

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