Search Tools

Links to resources facilitating searching for articles of interest.

Found 12 links

Displaying 12 links

BioPortalDatabase Content

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BioPortal is a web accessible open repository of biomedical ontologies. Users may browse, search and visualize ontologies, as well as participate in the evaluation and evolution of ontology reviews by adding notes, corrections, reviews, etc. Data from other sources such as GEO, ClinicalTrials.gov and ArrayExpress may also be integrated with the ontologies.

This content is being maintained by whetzel.

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botXminerDatabase Content

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botXminer is a literature searching tool that allows you to search BotDB. BotDB citations contain only those articles with either \'botulinum\' or \'tetanus\' anywhere in their text. botXminer is an interface to this subset of complete medline xml files loaded into an Oracle XMLDB.

EBI ToolsTool Content

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EBI Tools is a project that aims to provide programmatic access to the various databases and retrieval and analysis services that the European Bioinformatics Institute (EBI) provides through Simple Object Access Protocol (SOAP) and other related web service technologies. Example tools include those to compute sequence similarity searches, pairwise/multiple sequence alignment and protein functional analysis.

eTBLASTDatabase Content

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eTBLAST is a textual similarity search engine. This server can parse and summarize the results of an abstract similarity search to find appropriate journals for publication, authors with expertise in a given field, and documents similar to a submitted query.

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GoPubMedTool Content

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GoPubMed is a tool that allows users to explore the results of PubMed queries in the context of Gene Ontology (GO) terms.

links directory index: 267
TitlePublication YearGoogle Scholar Citation Count
GoPubMed: exploring PubMed with the Gene Ontology2005267

GPSDBDatabase Content

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Gene and Protein Synonym DataBase (GPSDB) is a collection of gene and protein names, organized by species that can be used to search for a given gene/protein name, retrieve all synonyms for this entity, and query Medline with a set of user-selected terms.

HubMedTool Content

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HubMed uses information from PubMed's database, provided by the NCBI through the EUtils web service, to produce a search interface focused on browsing, organising and gathering information from the biomedical literature.

links directory index: 39
TitlePublication YearGoogle Scholar Citation Count
HubMed: a web-based biomedical literature search interface200639

PubCrawlerTool Content

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It goes to the library. You go to the pub; receive email alerts for current contents of PubMed and GenBank; e.g. use accession number of htg record as query to receive sequence updates (as the version number changes).

PubMedDatabase Content

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Entrez-searchable database of biomedical literature citations with links to molecular resources at the NCBI.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

PubMed CentralDatabase Content

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PubMed Central (PMC) is the U.S. National Institutes of Health (NIH) free digital archive of biomedical and life sciences journal literature.

soaPDBTool Content

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soaPDB is a web application for the generation and organization of saved PDB searches as well email notifications.