Genomics

These links provide up-to-date and relevant information for genomic researchers.

Found 35 links

Displaying 15 links

BiERappTool Content

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BierApp is a web-based interactive framework to assist in the prioritization of disease candidate genes in whole exome sequencing studies.

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BiForce ToolboxTool Content

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BiForce Toolbox is a webserver for high throughput analysis of pair-wise epistasis in GWAS of quantitative and disease traits.

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CIViC - Clinical Interpretation of Variants in CancerResource Content

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Precision medicine refers to the use of prevention and treatment strategies that are tailored to the unique features of each individual and their disease. In the context of cancer this might involve the identification of specific mutations shown to predict response to a targeted therapy. The biomedical literature describing these associations is large and growing rapidly. Realizing precision medicine will require this information to be centralized, debated and interpreted for application in the

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DGIdb - Mining the Druggable GenomeResource Content

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The Drug-Gene Interaction database (DGIdb) mines existing resources that generate hypotheses about how genes might be targeted therapeutically or prioritized for drug development. It provides an interface for searching lists of genes against a compendium of drug-gene interactions and potentially 'druggable' genes.

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DIANA-microT v5.0Tool Content

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The DIANA-microT web server predicts targets for miRNAs and provides functional information on the predicted miRNA:target gene interaction from various online biological resources. Updates enable the association of miRNAs to diseases through bibliographic analysis and connection to the UCSC genome browser. Updates include sophisticated workflows.

GendooTool Content

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Gene Disease Features Ontology-based Overview System (Gendoo) is a web tool for visualizing disease feature profiles generated from the assignment of MeSH vocabulary for associated drugs, biological phenomena and anatomy to OMIM data. This approach assists in interpreting -omic data for its molecular and clinical aspects.

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GeneMANIATool Content

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GeneMANIA is web interface for generating hypotheses about gene function, analyzing gene lists and prioritizing genes for functional assays. Users input a query list for extension and weighting with functionally similar genes. Six organisms are supported.

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Genome HubResource Content

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Lists of genome-related sites maintained by the NHGRI on behalf of the International Human Genome Sequencing Consortium.

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Genome MapsTool Content

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Genome Maps is a web server for genome browsing which implements an innovative model of data transfer and management for fast genome browsing. Relevant biological data on genes, transcripts, exons, regulatory features, SNPs, karotypes, etc. are imported from web services and available as tracks.

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GRNsight: a Web Application and Service for Visualizing Models of Small- to Medium-scale Gene Regulatory NetworksResource Content

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GRNsight allows users to upload Excel spreadsheets containing an adjacency matrix and automatically creates and displays a graph of the gene regulatory network model. The application colors the edges and adjusts their thickness based on the sign (activation or repression) and the strength (magnitude) of the regulatory relationship, respectively. GRNsight then allows the user to modify the graph in order to define the best visual layout for the network.

This content is being maintained by kdahlquist.

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GSA-SNPTool Content

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GSA-SNP web server performs gene set analysis (GSA) on genome-wide association data, using 3 different GSA methods.

GWAS3DTool Content

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GWAS3D web server computes the probability of genetics variants affecting regulatory pathways and underlying disease/trait associations by integrating chromatin state, functional genomics, sequence motif, and conservation information when given GWAS data or variant list. GWAS3D also provides comprehensive annotations and visualizations to help users interpreting the results.

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Human Genome Variation NomenclatureResource Content

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The Human Genome Society has established a committee to suggest standards for the description of sequence variants in DNA, RNA, and protein sequences. The standards are linked here.

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i-GSEA4GWASTool Content

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i-GSEA4GWAS is a web server for identification of pathways and gene sets associated with traits. An improved gene set enrichment analysis (i-GSEA) is applied to genome wide association studies (GWAS).

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