Databases

This section contains human genome and ORFs, genetics, polymorphism, gene-/system-/disease-specific information.

Found 58 links

Displaying 15 links

ADHDgeneDatabase Content

Share This Link

Genetic database for attention deficit hyperactivity disorder. ADHDgene database was developed by integrating ADHD-related genetic factors by profound literature reading.

Allele frequency netDatabase Content

Share This Link

The allele frequency net database is an online repository that contains information on the frequencies of immune genes and their corresponding alleles in different populations. At present, the system contains data on the frequency of genes from different polymorphic regions such as human leukocyte antigens, killer-cell immunoglobulin-like receptors, major histocompatibility complex Class I chain-related genes and a number of cytokine gene polymorphisms.

AntigenDBDatabase Content

Share This Link

AntigenDB contains 500 antigens to pathogenic species curated from the literature and other immunological resources. In AntigenDB, a database entry contains information regarding the sequence, structure, origin, etc. of an antigen with additional information such as B and T-cell epitopes, MHC binding, function, gene-expression and post translational modifications, where available. AntigenDB also provides links to major internal and external databases.

This content is being maintained by raghavagps.

ASPicDBDatabase Content

Share This Link

ASPicDB provides a unique annotation resource of human protein variants generated by alternative splicing. A total of 256,939 protein variants from 17,191 multi-exon genes have been extensively annotated through machine learning tools providing information of the protein type (globular and transmembrane), localization, presence of PFAM domains, signal peptides, GPI-anchor propeptides, transmembrane and coiled-coil segments. Furthermore, full-length variants can be now specifically selected based on the annotation of CAGE-tags and polyA signal and/or polyA sites, marking transcription initiation and termination sites, respectively. The retrieval can be carried out at gene, transcript, exon, protein or splice site level allowing the selection of data sets fulfilling one or more features settled by the user.

This content is being maintained by Graziano Pesole.

BGMUTDatabase Content

Share This Link

Blood Group Antigen Gene Mutation Database: documents variations in genes that encode antigens for human blood groups. It is a locus-specific mutation database (LSDB) that covers multiple genes.

CADgeneDatabase Content

Share This Link

The CADgene, a comprehensive manually curated database for coronary artery disease genes. Candidate genes are classified into 12 functional categories based on their roles in CAD. Each gene includes detailed information from related studies (e.g. the size of case-control, population, SNP, odds ratio, P-value, etc.) and useful annotations, which include general gene information, Gene Ontology annotations, KEGG pathways, protein-protein interactions and others.

Cancer Cell MapDatabase Content

Share This Link

The Cancer Cell Map contains selected human cancer related signaling pathways which you can browse or search.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

canSARDatabase Content

Share This Link

canSAR is an integrated database that brings together biological, chemical, pharmacological (and eventually clinical) data. Its goal is to integrate this data and make it accessible to cancer research scientists from multiple disciplines, in order to help with hypothesis generation in cancer research and support translational research.

CellBaseTool Content

Share This Link

CellBase is a relational database that contains relevant biological information about genomic features and proteins, gene expression regulation, functional annotation, genomic variation and systems biology information. Integrated are the most relevant repositories such as Ensembl, Uniprot, Omim, COSMIC, IntAct, HapMap, Reactome, and others.

This content is being maintained by imedina.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

COLT-CancerDatabase Content

Share This Link

The COLT-Cancer database is a collection of shRNA dropout signatures profiles, covering ~16000 human genes, and derived from more than 70 Pancreatic, Ovarian and Breast human cancer cell-lines using a microarray detection platform.

ConsensusPathDBDatabase Content

Share This Link

ConsensusPathDB is a meta-database that integrates physical protein interactions, metabolic and signaling reactions and gene regulatory interactions in a seamless functional association network that simultaneously describes multiple functional aspects of genes, proteins, complexes, metabolites, etc. ConsensusPathDB offers different ways of utilizing these integrated interaction data, with tools for visualization, analysis and interpretation of high-throughput expression data in the light of functional interactions and biological pathways.

COSMICDatabase Content

Share This Link

COSMIC curates comprehensive information on somatic mutations in human cancer. Release v48 (July 2010) describes over 136,000 coding mutations in almost 542,000 tumour samples; of the 18,490 genes documented, 4803 (26%) have one or more mutations. Full scientific literature curations are available on 83 major cancer genes and 49 fusion gene pairs. Biomart allows more automated data mining and integration with other biological databases. Annotation of genomic features has become a significant focus. COSMIC integrates many diverse types of mutation information and is making much closer links with Ensembl and other data resources.

CUBE-DBDatabase Content

Share This Link

A database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families, but based on all currently available vertebrate genomes.

This content is being maintained by ivanam.

dbDEPCDatabase Content

Share This Link

A database of differentially expressed proteins in human cancers (dbDEPC) collects curated cancer proteomics data, provides a resource for information on protein-level expression changes, and explores protein profile differences among different cancers. dbDEPC currently contains 1803 proteins differentially expressed in 15 cancers, curated from 65 mass spectrometry (MS) experiments in peer-reviewed publications.

Associated Tag Cloud