DNA and Genomic Analysis

These resources are free, publicly available, multi-purpose tools for genomic and DNA sequence analysis. Links to resources for sequence presentation, manipulation tasks, and format conversion are found here. As well, tools for genomic data analysis are included.

Found 70 links

Displaying 15 links

BCM Search LauncherResource Content

Share This Link

Molecular biology-related search and analysis services organized by function; single point-of-entry for related searches (e.g., a single page for launching protein sequence searches using standard parameters).

BCM Search Launcher Sequence UtilitiesTool Content

Share This Link

Includes reverse complement, 6-frame translation, RepeatMasker, ReadSeq format conversion.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

BiERappTool Content

Share This Link

BierApp is a web-based interactive framework to assist in the prioritization of disease candidate genes in whole exome sequencing studies.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

Bio-Array Resource (BAR)Tool Content

Share This Link

The Bio-Array Resource for Plant Biology: user-friendly web-based tools for working with functional genomics and other data. Most are designed with the plant (mainly Arabidopsis) reseacher in mind, but a couple of them can be useful to the wider research community.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

BioExtractTool Content

Share This Link

The BioExtract Server is a platform for the creation of bioinformatic workflows to aid the analysis of genomic data. A series of recorded tasks can be saved and shared. Integrated resources include NCBI databases, EMBL-Bank, UniProt and UniRef, as well as a large number of computational tools such as EMBOSS and KEGG.

Bioinformatics ToolkitTool Content

Share This Link

This Toolkit is a collection of a wide range of tools and links for sequence analysis, function, and structure prediction. This resource offers convienent web interfaces for many freely available tools.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

BioMart CentralDatabase Content

Share This Link

BioMart Central Portal is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. The system also simplifies cross-database searches that might otherwise require several complicated steps.

BioMet Toolbox 2.0Tool Content

Share This Link

BioMet Toolbox 2.0 is a web server for genome-wide analysis of metabolism and omics data. BioMet Toolbox exploits the capabilites of metabolic networks described in genome scale models using flux analysis and random sampling, and gene set analysis and basic microarray analysis, thereby providing an integrated analysis to identify coregulated subnetwork structures within the metabolic network and also for identifying statistically significant gene sets enabling biological interpretation.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

BWATool Content

Share This Link

Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. It implements two algorithms, bwa-short and BWA-SW. The former works for query sequences shorter than 200bp and the latter for longer sequences up to around 100kbp. Both algorithms do gapped alignment. They are usually more accurate and faster on queries with low error rates.

ChinookTool Content

Share This Link

Chinook is a peer-to-peer (P2P) service for the discovery, use and assessment of bioinformatics programs. Chinook Online allows researchers to connect and run distributed bioinformatics programs using a web application.

Cyber-T WebserverTool Content

Share This Link

Cyber-T provides differential analysis tools for high-throughput data such as data from microarrays, next generation sequencing platforms and mass spectrometry. Various statistical analyses are computed using R-code.

deepToolsTool Content

Share This Link

deepTools: a flexible platform for exploring deep-sequencing data based on the Galaxy platform.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

DigSeeTool Content

Share This Link

DigSee (for Disease Gene Search Engine with Evidence Sentences) is a web server for understanding the association between diseases and genes. This cancer version searches Medline abstracts for evidence sentences describing the genes involved in the development of cancer through biological events.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

Associated Tag Cloud