Web Services

This section has links to applications which have released Web Service API's.

Found 27 links

Displaying 15 links

BIND SOAPTool Content

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BIND SOAP is a web service providing end users with the ability to access functionality offered by the BIND Search Service through a remote Application Programming Interface (API).

links directory index: 752
TitlePublication YearGoogle Scholar Citation Count
BIND: the Biomolecular Interaction Network Database2003752

BioBIKETool Content

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BioBIKE is a web-based environment enabling biologists with little programming expertise to combine tools, data and knowledge in novel and complex ways. BioBIKE is composed of three components: a biological knowledge base, a graphical programming interface and an extensible set of tools. Users may also invent their own tools.

Biocoders HubResource Content

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A community for sharing bioinformatics source code with other specialists.

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BioExtractTool Content

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The BioExtract Server is a platform for the creation of bioinformatic workflows to aid the analysis of genomic data. A series of recorded tasks can be saved and shared. Integrated resources include NCBI databases, EMBL-Bank, UniProt and UniRef, as well as a large number of computational tools such as EMBOSS and KEGG.

BioSmalltalkTool Content

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BioSmalltalk is an Open-Source library for doing bioinformatics with Smalltalk, the reference object technology environment and place of invention of the Object-Oriented Programming, Generational Garbage Collection, Unit Testing, MVC, JIT Compilation, Browsers, Traits, etc. The goal of BioSmalltalk is to concile the benefits of a pure object environment with bioinformatics related tasks.

This content is being maintained by hernan.

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caBIO Web ServicesResource Content

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SOAP interfaces used to access the cancer Bioinformatics Infrastructure Objects(caBIO) funtionality.

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ChinookTool Content

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Chinook is a peer-to-peer (P2P) service for the discovery, use and assessment of bioinformatics programs. Chinook Online allows researchers to connect and run distributed bioinformatics programs using a web application.

CIViC - Clinical Interpretation of Variants in CancerResource Content

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Precision medicine refers to the use of prevention and treatment strategies that are tailored to the unique features of each individual and their disease. In the context of cancer this might involve the identification of specific mutations shown to predict response to a targeted therapy. The biomedical literature describing these associations is large and growing rapidly. Realizing precision medicine will require this information to be centralized, debated and interpreted for application in the

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DGIdb - Mining the Druggable GenomeResource Content

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The Drug-Gene Interaction database (DGIdb) mines existing resources that generate hypotheses about how genes might be targeted therapeutically or prioritized for drug development. It provides an interface for searching lists of genes against a compendium of drug-gene interactions and potentially 'druggable' genes.

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EBI ToolsTool Content

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EBI Tools is a project that aims to provide programmatic access to the various databases and retrieval and analysis services that the European Bioinformatics Institute (EBI) provides through Simple Object Access Protocol (SOAP) and other related web service technologies. Example tools include those to compute sequence similarity searches, pairwise/multiple sequence alignment and protein functional analysis.

EMBRACE Web ServiceResource Content

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European Model for Bioinformatics Research and Community Education (EMBRACE) web service collection consists of EDAM, an ontology for describing life sciences; BioXSD, a schema for exchanging data between services and a centralized registry of ~1000 services.

links directory index: 11
TitlePublication YearGoogle Scholar Citation Count
The EMBRACE web service collection201011

Gene3DTool Content

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The Gene3D web services provide programmatic access to the CATH-Gene3D annotation resources and in-house software tools. These services include Gene3DScan for identifying structural domains within protein sequences, access to pre-calculated annotations for the major sequence databases, and linked functional annotation from UniProt, GO and KEGG.

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GeneCodis3Tool Content

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Originally designed in 2007 for modular enrichment analysis, GeneCodis assists in functional analysis of gene lists, integrating information from different sources. GeneCodis also finds regulatory patterns, and singular and modular patterns of interrelated annotations. Noisy and redundant output data has been removed from enrichment results, and greater comparative analyses are possible.

GRNsight: a Web Application and Service for Visualizing Models of Small- to Medium-scale Gene Regulatory NetworksResource Content

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GRNsight allows users to upload Excel spreadsheets containing an adjacency matrix and automatically creates and displays a graph of the gene regulatory network model. The application colors the edges and adjusts their thickness based on the sign (activation or repression) and the strength (magnitude) of the regulatory relationship, respectively. GRNsight then allows the user to modify the graph in order to define the best visual layout for the network.

This content is being maintained by kdahlquist.

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IBWS: IST Bioinformatics Web ServicesResource Content

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The Bioinformatics group at the National Cancer Research Institute (IST) of Genoa compiled a suite of free web services IBWS.

This content is being maintained by PaoloRomano.

links directory index: 0
TitlePublication YearGoogle Scholar Citation Count
IBWS: IST Bioinformatics Web Services.20100