Databases

This section contains links that describe several different flavors of the open source SQL (structured query language) used in many bioinformatics databases.

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DGIdb - Mining the Druggable GenomeResource Content

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The Drug-Gene Interaction database (DGIdb) mines existing resources that generate hypotheses about how genes might be targeted therapeutically or prioritized for drug development. It provides an interface for searching lists of genes against a compendium of drug-gene interactions and potentially 'druggable' genes.

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HMS-ICSTool Content

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The Hyperlink Management System (HMS) automatically updates and maintains hyperlinks among major databases using various data IDs (e.g. HUGO Gene Symbols, IDs from PDB, UniProt). The ID Converter System (ICS) supports the conversion of data IDs using the corresponding tables in HMS.

InterMineTool Content

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InterMine is an open source data warehouse built specifically for the integration and analysis of complex biological data. InterMine enables the creation of biological databases accessed by sophisticated web query tools.

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MOWServTool Content

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MOWServ provides integrated access to databases and analytical tools. Based on the BioMoby protocol for inter-service communication.

MySQLTool Content

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MySQL is the world's most popular Open Source Database, designed for speed, power and precision.

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PostgreSQLTool Content

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PostgreSQL is a sophisticated Object-Relational DBMS, supporting almost all SQL constructs, including subselects, transactions, and user-defined types and functions. It is the most advanced open-source database available anywhere.

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TogoWSTool Content

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TogoWS service provides solutions to web service incompatibilities such as interface and data type incompatibilities. TogoWS REST API and TogoWS SOAP API resolve these issues.