Related Links for PDBSiteScanTool Content

Found 26 links

Displaying 15 links

AdepthTool Content

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Adepth web server provides both depth and height representation of an atom in a macromolecule; it is capable of computing isosurfaces for atomic depths and presenting graphical view of marcomolecular shape at some distance away from the surface.

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BSDDDatabase Content

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BSDD (Biomolecules Segment Display Device) searches for and displays user defined sequence motifs in known protein structures. This web based tool incorporates the graphics package of RASMOL for visualization.

This content is being maintained by kitty.pillai.

Catalytic Site IdentificationTool Content

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The Catalytic Site Identification web server provides the ability to find structural matches to a user-specified catalytic site among all Protein Data Bank (PDB) proteins. The web server can also examine a user-specified protein to identify structural matches to a library of catalytic sites.

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CRASPTool Content

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Correlation analysis of the amino acid substitutions in protein sequences (CRASP) takes multiple alignments of amino acid sequences as input, and detects coordinated residue substitutions. These substitutions may suggest dependent evolution of functionally related pairs of amino acids.

GlyprotTool Content

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Glyprot is a tool for predicting and modelling all potential N-glycosylation sites in a given 3D structure.

This content is being maintained by luetteke.

links directory index: 62
TitlePublication YearGoogle Scholar Citation Count
GlyProt: in silico glycosylation of proteins200562

PBSwordTool Content

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PBSword is a web server designed for efficient and accurate comparisons and searches of geometrically similar protein-protein binding sites from a large-scale database.

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pevoSOARTool Content

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pvSOAR takes a PDB ID or structure file as input, and searches for other proteins with surface regions that are similar to the query structure.

Phospho3D 2.0Database Content

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Phospho3D is a database of 3D structures of phosphorylation sites derived from Phospho.ELM. The database provides the results of a large-scale structural comparison of the 3D zones versus a representative dataset of structures, thus associating to each P-site a number of structurally similar sites. Phopsho3D has now many new features. Moreover, it features P3Dscan, a new functionality that allows the user to submit a protein structure and scan it against the 3D zones collected in Phospho3D.

This content is being maintained by azanzoni.

pKNOT-v2Tool Content

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pKNOT (Protein Knot) is a tool that can detect knots in proteins as well as providing information on knotted proteins in PDB. pKNOT-v2 has been updated with a homology modeling tool such that the server can now accept protein sequences in addition to 3D structures or PDB IDs and return knot analysis.

This content is being maintained by Yanlong Lai.

links directory index: 17
TitlePublication YearGoogle Scholar Citation Count
pKNOT: the protein KNOT web server200717

PRALINETool Content

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Praline is a multiple sequence alignment program that can integrate information from sequence similarity searches and secondary structure prediction.

ProBiSTool Content

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Protein Binding Sites (ProBiS) is a web server which detects protein binding sites based on local structural alignments. Algorithms have been parallelized to allow for faster computing against the PDB. Pre-calculated protein similarity profiles for over 29,000 non-redundant proteins are also available.

This content is being maintained by konc.

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