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Twinscan
http://genes.cs.wustl.edu/ [open in a new window]
Twinscan is a system for predicting gene-structure in eukaryotic genomic sequences. In order to make its predictions, Twinscan combines the information from predicted coding regions and splice sites with conserservation measurements between the target sequence and sequences from a closely related genome. Currently sequences from mammalian genomes, and those of Arabidopsis thaliana, C. elegans, C. briggsae and strains JEC21 and H99 of Cryptococcus neoformans can be processed using Twinscan.
links directory index: 526| Title | ||
|---|---|---|
| Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map | 2003 | 107 |
| Integrating genomic homology into gene structure prediction | 2001 | 419 |
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tags
algorithms animals base composition base sequence chromosome mapping computational biology conserved sequence dna exons forecasting gc rich sequence genes genome human genome humans mice molecular evolution nucleic acid sequence homology predictive value of tests sensitivity and specificity sequence alignment statistical models synteny
algorithms animals base composition base sequence chromosome mapping computational biology conserved sequence dna exons forecasting gc rich sequence genes genome human genome humans mice molecular evolution nucleic acid sequence homology predictive value of tests sensitivity and specificity sequence alignment statistical models synteny most recent link
Minmotif Minerhttp://minimotifminer.orgMinimotif Miner (MnM) analyzes protein queries for the presence of short contiguous peptide motifs that have a known function in at least one other protein (Minimotifs), Minimotif functions include posttranslational…
Minmotif Minerhttp://minimotifminer.orgMinimotif Miner (MnM) analyzes protein queries for the presence of short contiguous peptide motifs that have a known function in at least one other protein (Minimotifs), Minimotif functions include posttranslational…
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