CASTp

http://sts.bioengr.uic.edu/castp/ [open in a new window]

Computed Atlas of Surface Topography of proteins (CASTp) locates and measures concave surface regions on 3D protein structures. This tool can be used to study surface features, binding sites, and functional regions of proteins.

links directory index: 1616

Title	Publication Year	Google Scholar Citation Count
CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues	2006	372
CASTp: Computed Atlas of Surface Topography of proteins	2003	264
Analytical shape computation of macromolecules: II. Inaccessible cavities in proteins	1998	153
Analytical shape computation of macromolecules: I. Molecular area and volume through alpha shape	1998	226
Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design	1998	601

NAR Web Server Issue 2003NAR Web Server Issue 2006

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tagsalgorithms amino acids bacterial proteins bacteriorhodopsins binding sites enzymes ligands macromolecular substances mathematical computing molecular models myoglobin nucleic acid conformation protein conformation protein databases protein sequence analysis proteins ribonucleases sequence alignment single nucleotide polymorphism tertiary protein structure