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BioProspector
http://robotics.stanford.edu/~xsliu/BioProspector/ [open in a new window]
Server which scans upstream of genes in the same gene expression cluster for regulatory sequence motifs using a Gibbs sampling strategy. The Markov background model is used for non-motif bases, improving specificity of predicted motif locations.
links directory index: 702| Title | ||
|---|---|---|
| A suite of web-based programs to search for transcriptional regulatory motifs | 2004 | 32 |
| BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes | 2001 | 670 |
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algorithms bacillus subtilis base sequence binding sites carrier proteins conserved sequence cyclic amp receptor protein dna escherichia coli gene expression profiling gene expression regulation genetic models genetic transcription markov chains nucleic acid regulatory sequences oligonucleotide array sequence analysis rap1 gtp-binding proteins regulator genes saccharomyces cerevisiae sequence alignment tata box transcription factors
algorithms bacillus subtilis base sequence binding sites carrier proteins conserved sequence cyclic amp receptor protein dna escherichia coli gene expression profiling gene expression regulation genetic models genetic transcription markov chains nucleic acid regulatory sequences oligonucleotide array sequence analysis rap1 gtp-binding proteins regulator genes saccharomyces cerevisiae sequence alignment tata box transcription factors featured link
UCSC Fugu Genome Browse Gatewayhttp://genome.ucsc.edu/cgi-bin/hgGateway?org=Fugu&db=0&hgsid=27736277Provides a rapid and reliable display of any requested portion of the Fugu genome at any scale, together with dozens of aligned annotation tracks.
UCSC Fugu Genome Browse Gatewayhttp://genome.ucsc.edu/cgi-bin/hgGateway?org=Fugu&db=0&hgsid=27736277Provides a rapid and reliable display of any requested portion of the Fugu genome at any scale, together with dozens of aligned annotation tracks.
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