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Links tagged with 'untranslated regions'

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ESTExplorerTool Content

http://estexplorer.biolinfo.org [open in a new window]

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DNA > Annotations
DNA > Structure and Sequence Feature Detection
Expression > cDNA, EST, SAGE
Protein > Annotation and Function
Protein > Domains and Motifs
Protein > Networks & Interactions, Pathways and Enzymes

ESTExplorer is an automated suite of programs to pre-process, assemble and functionally annotate ESTs at both DNA and protein level.

links directory index: 166
TitlePublication YearGoogle Scholar Citation Count
ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform200750
A hitchhiker's guide to expressed sequence tag (EST) analysis2007116
NAR Web Server Issue 2007
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tagsanimals complementary dna computational biology consensus sequence dna sequence analysis expressed sequence tags female genetic databases genomics haemonchus humans male nucleic acid databases oligonucleotide array sequence analysis programming languages untranslated regions

Genome Biology Release 3 of the Drosophila genomeResource Content

http://genomebiology.com/series/drosophila [open in a new window]

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Model Organisms > Fly

A series of refereed research articles describing Release 3 of the Drosophila genome are freely available online. The articles describe the finishing and annotation of the genome sequence, computational tools, and functional studies.

links directory index: 1971
TitlePublication YearGoogle Scholar Citation Count
Systematic determination of patterns of gene expression during Drosophila embryogenesis2002340
Computational analysis of core promoters in the Drosophila genome20023
Apollo: a sequence annotation editor2002279
An integrated computational pipeline and database to support whole-genome sequence annotation200241
A Drosophila full-length cDNA resource2002148
Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence2002275
Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome2002125
Heterochromatic sequences in a Drosophila whole-genome shotgun assembly2002168
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective2002313
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review2002279
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tagsalgorithms amino acid sequence animals base composition base sequence cluster analysis complementary dna computational biology computer-assisted image processing conserved sequence contig mapping database management systems developmental gene expression regulation dna sequence analysis dna transposable elements drosophila drosophila melanogaster drosophila proteins euchromatin expressed sequence tags forecasting gene dosage gene expression profiling gene rearrangement genetic databases genetic promoter regions genetic variation genome heterochromatin humans in situ hybridization insect genes insertional mutagenesis messenger rna molecular evolution molecular sequence data multigene family nucleic acid conformation nucleic acid databases oligonucleotide array sequence analysis physical chromosome mapping protein databases research design software design software validation species specificity transcription initiation site untranslated regions x chromosome

RegRNATool Content

http://regrna.mbc.nctu.edu.tw/ [open in a new window]

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DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation
Expression > Splicing
RNA > Functional RNAs
RNA > Motifs

Regulatory RNA (RegRNA) is a server for identifying regulatory RNA motifs and elements in mRNA sequences including: motifs located in the 5\'-UTR and 3\'-UTR; motifs involved in mRNA splicing and transcriptional regulation; other motifs in mRNA such as riboswitches and splice donor/acceptor sites; RNA structural features; and miRNA target sites.

links directory index: 59
TitlePublication YearGoogle Scholar Citation Count
RegRNA: an integrated web server for identifying regulatory RNA motifs and elements200659
NAR Web Server Issue 2006
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tagsanimals humans messenger rna mice nucleic acid conformation nucleic acid sequence homology rats ribonucleic acid regulatory sequences rna sequence analysis systems integration untranslated regions

SatellogDatabase Content

http://satellog.bcgsc.ca/ [open in a new window]

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DNA > Structure and Sequence Feature Detection
Human Genome > Health and Disease

Satellog is a database for the identification and prioritization of satellite repeats in disease association studies.

links directory index: 18
TitlePublication YearGoogle Scholar Citation Count
Satellog: a database for the identification and prioritization of satellite repeats in disease association studies200518
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tags3' untranslated regions base sequence biomedical research cluster analysis computational biology dna sequence analysis genetic databases genetic polymorphism genetic predisposition to disease human genome humans huntington disease inborn genetic diseases microsatellite repeats nucleic acid databases schizophrenia sequence alignment trinucleotide repeat expansion trinucleotide repeats untranslated regions

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