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Links tagged with 'two-hybrid system techniques'

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DePIETool Content

http://biocore.unl.edu/primer/primerPI.html [open in a new window]

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DNA > Tools For the Bench
Protein > Networks & Interactions, Pathways and Enzymes

Design Primers for Protein Interaction Experiments (DePIE) is a web-based primer design tool for protein interaction experiments.

links directory index: 4
TitlePublication YearGoogle Scholar Citation Count
DePIE: Designing Primers for Protein Interaction Experiments20034
NAR Web Server Issue 2003
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tagsdna primers nucleic acid databases nucleic acid denaturation polymerase chain reaction protein databases protein sorting signals proteins sequence analysis tertiary protein structure two-hybrid system techniques yeasts

FlyFactorSurveyDatabase Content

http://pgfe.umassmed.edu/TFDBS/ [open in a new window]

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Model Organisms > Databases

FlyFactorSurvey is a database of DNA binding specificities for Drosophila transcription factors (TFs) determined using the bacterial one-hybrid system. The database provides to recognition motifs and position weight matrices for TFs. Search tools and flat file downloads are provided to retrieve binding site information (as sequences, matrices and sequence logos) for individual TFs, groups of TFs or for all TFs with characterized binding specificities. Linked analysis tools allow users to identify motifs within our database that share similarity to a query matrix or to view the distribution of occurrences of an individual motif throughout the Drosophila genome.

links directory index: 9
TitlePublication YearGoogle Scholar Citation Count
FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system20119
NAR Database Issue 2011
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external linksLink on Wikipedia
tagsanimals bacteria binding sites drosophila drosophila proteins genetic databases transcription factors transcriptional regulatory elements two-hybrid system techniques

VisANTTool Content

http://visant.bu.edu/ [open in a new window]

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Expression > Gene Set Analysis
Expression > Networks
Expression > Protein Expression
Expression > Transcript Expression Analysis
Protein > Networks & Interactions, Pathways and Enzymes

VisANT is an integrative visual analysis tool for biological networks and pathways that contains modules for querying and integrating KEGG pathways with expression data. VisANT is java-based, and can be run as a java applet, as a java web application, or downloaded and run locally. New functions in VisANT 3.5 allow determination of over-representation and expression enrichment.

links directory index: 372
TitlePublication YearGoogle Scholar Citation Count
VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology200947
Towards zoomable multidimensional maps of the cell200749
VisANT 3.0: new modules for pathway visualization, editing, prediction and construction200754
VisANT: data-integrating visual framework for biological networks and modules2005107
VisANT: an online visualization and analysis tool for biological interaction data2004115
NAR Web Server Issue 2005NAR Web Server Issue 2007NAR Web Server Issue 2009
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tagsalgorithms animals biological models caenorhabditis elegans cell cycle computational biology computer simulation database management systems drosophila fungal genes gene expression profiling gene expression regulation gene regulatory networks genetic databases genetic models genetic transcription genome helminth genes helminth proteins humans macromolecular substances metabolism mice protein databases protein interaction mapping proteome saccharomyces cerevisiae saccharomyces cerevisiae proteins signal transduction software design systems integration three-dimensional imaging transcription factors two-hybrid system techniques

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