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AUGUSTUS

http://bioinf.uni-greifswald.de/augustus [open in a new window]

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AUGUSTUS is a eukaryotic gene prediction tool. It can integrate evidence, e.g. from RNA-Seq, ESTs, proteomics, but can also predict genes ab initio. The PPX extension to AUGUSTUS can take a protein sequence multiple sequence alignment as input to find new members of the family in a genome. It can be run through a web interface, or downloaded and run locally.

This content is being maintained by Mario Stanke.

links directory index: 233

Title	Publication Year	Google Scholar Citation Count
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources	2006	87
AUGUSTUS: ab initio prediction of alternative transcripts	2006	50
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints	2005	34
AUGUSTUS: a web server for gene finding in eukaryotes	2004	61
The formation of deoxycholic acid in patients with type II and IV hyperlipoproteinaemia	1976	1

NAR Web Server Issue 2004NAR Web Server Issue 2005NAR Web Server Issue 2006

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tagsadult algorithms alternative splicing animals artificial intelligence automated pattern recognition base sequence bile acids and salts cholic acids chromosome mapping computer simulation deoxycholic acid dna sequence analysis drosophila melanogaster exons female gene components gene expression genes genetic databases genetic models genetic variation genomics human genome humans hypercholesterolemia hyperlipidemias introns ldl lipoproteins male markov chains middle aged molecular sequence data proteins sequence alignment statistical models stochastic processes triglycerides vldl lipoproteins