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Links tagged with 'structure-to-structure network'

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AlphaPredTool Content

http://www.imtech.res.in/raghava/alphapred/ [open in a new window]

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Protein > 2-D Structure Prediction

The AlphaPred server predicts the alpha turn residues in the given protein sequence. The method is based on the neural network training on PSI-BLAST generated position specific matrices and PSIPRED predicted secondary structure.

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links directory index: 39
TitlePublication YearGoogle Scholar Citation Count
Prediction of alpha-turns in proteins using PSI-BLAST profiles and secondary structure information200439
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tagsalpha-turns amino acid sequence ANN molecular sequence data neural networks (computer) prediction protein databases protein sequence analysis proteins roc curve secondary protein structure sequence alignment sequence-to-structure network statistical models structure-to-structure network

Ar_NHPredTool Content

http://www.imtech.res.in/raghava/ar_nhpred [open in a new window]

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Protein > Biochemical Features
Protein > Networks & Interactions, Pathways and Enzymes
Protein > Sequence Features

The Ar_NHPred server predicts the aromatic backbone NH interaction in a given amino acid sequence where the pi ring of aromatic residues interact with the backbone NH groups.

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links directory index: 4
TitlePublication YearGoogle Scholar Citation Count
Role of evolutionary information in prediction of aromatic-backbone NH interactions in proteins20044
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tagsaromatic amino acids aromatic-backbone hydrogen bonding molecular evolution molecular models multiple sequence alignment Neural Network neural networks (computer) NH interactions protein protein databases proteins secondary protein structure sequence alignment sequence-to-structure network structure-to-structure network

GAMMAPREDResource Content

http://www.imtech.res.in/raghava/gammapred/ [open in a new window]

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Protein > 2-D Structure Prediction

The GammaPred server predicts the gamma turn residues in the given protein sequence. The method is based on the neural network training on PSI-BLAST generated position specific matrices and PSIPRED predicted secondary structure.

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links directory index: 56
TitlePublication YearGoogle Scholar Citation Count
A neural-network based method for prediction of gamma-turns in proteins from multiple sequence alignment200356
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tagsgamma turns molecular models Neural Network neural networks (computer) prediction protein databases proteins secondary protein structure sequence alignment sequence-to-structure network structure-to-structure network

SARpredTool Content

http://www.imtech.res.in/raghava/sarpred/ [open in a new window]

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Protein > 2-D Structure Prediction
Sequence Comparison > Multiple Sequence Alignments

SARpred, a neural network based method predicts the real value of surface acessibility by using multiple sequence alignment.

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links directory index: 50
TitlePublication YearGoogle Scholar Citation Count
Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure200550
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tagsamino acids neural networks neural networks (computer) prediction protein sequence analysis proteins reproducibility of results secondary protein structure sequence alignment sequence-to-structure network solvent accessibility solvents structure-to-structure network surface accessibility thioredoxins

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