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Links tagged with 'in situ hybridization'

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EMAGEDatabase Content

http://www.emouseatlas.org/emage/ [open in a new window]

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Expression > Databases
Model Organisms > Databases

EMAGE is a freely available online database of in situ gene expression patterns in the developing mouse embryo. Gene expression domains from raw images are extracted and integrated spatially into a set of standard 3D virtual mouse embryos at different stages of development, which allows data interrogation by spatial methods. An anatomy ontology is also used to describe sites of expression, which allows data to be queried using text-based methods. Data coverage has been increased by sourcing from a greater selection of journals.

links directory index: 30
TitlePublication YearGoogle Scholar Citation Count
The BioMart interface to the eMouseAtlas gene expression database EMAGE20112
EMAGE mouse embryo spatial gene expression database: 2010 update201028
NAR Database Issue 2010
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tagsaccess to information animals automation computational biology database management systems developmental gene expression regulation embryonic development factual databases gene expression gene expression profiling genetic databases immunohistochemistry in situ hybridization information storage and retrieval internet mammalian embryo messenger rna mice molecular imaging nucleic acid databases programming languages proteins reporter genes software user-computer interface

Genome Biology Release 3 of the Drosophila genomeResource Content

http://genomebiology.com/series/drosophila [open in a new window]

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Model Organisms > Fly

A series of refereed research articles describing Release 3 of the Drosophila genome are freely available online. The articles describe the finishing and annotation of the genome sequence, computational tools, and functional studies.

links directory index: 1971
TitlePublication YearGoogle Scholar Citation Count
Systematic determination of patterns of gene expression during Drosophila embryogenesis2002340
Computational analysis of core promoters in the Drosophila genome20023
Apollo: a sequence annotation editor2002279
An integrated computational pipeline and database to support whole-genome sequence annotation200241
A Drosophila full-length cDNA resource2002148
Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence2002275
Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome2002125
Heterochromatic sequences in a Drosophila whole-genome shotgun assembly2002168
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective2002313
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review2002279
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tagsalgorithms amino acid sequence animals base composition base sequence cluster analysis complementary dna computational biology computer-assisted image processing conserved sequence contig mapping database management systems developmental gene expression regulation dna sequence analysis dna transposable elements drosophila drosophila melanogaster drosophila proteins euchromatin expressed sequence tags forecasting gene dosage gene expression profiling gene rearrangement genetic databases genetic promoter regions genetic variation genome heterochromatin humans in situ hybridization insect genes insertional mutagenesis messenger rna molecular evolution molecular sequence data multigene family nucleic acid conformation nucleic acid databases oligonucleotide array sequence analysis physical chromosome mapping protein databases research design software design software validation species specificity transcription initiation site untranslated regions x chromosome

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