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Links tagged with 'research'

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GenePath2Tool Content

http://www.genepath.org/genepath2 [open in a new window]

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Protein > Networks & Interactions, Pathways and Enzymes

GenePath is a tool for automated construction of genetic networks and proposal of genetic experiments from mutant data.

links directory index: 118
TitlePublication YearGoogle Scholar Citation Count
GenePath: from mutations to genetic networks and back200518
GenePath: a system for inference of genetic networks and proposal of genetic experiments200329
GenePath: a system for automated construction of genetic networks from mutant data200364
GenePath: a computer program for genetic pathway discovery from mutant data20017
NAR Web Server Issue 2005
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tagsanimals artificial intelligence caenorhabditis elegans computational biology dictyostelium dna dna mutational analysis dna sequence analysis expert systems gene expression regulation genes genetic epistasis genetic models genomics humans knowledge larva mutation neural networks (computer) research single-blind method

Genome Database for RosaceaeDatabase Content

http://www.rosaceae.org/ [open in a new window]

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DNA > Mapping and Assembly
Expression > cDNA, EST, SAGE
Model Organisms > Plants

Genome Database for Rosaceae (GDR) contains all publically available Rosaceae sequences including annotated peach, strawberry and almond EST sequences and the genetically anchored peach physical map.

links directory index: 116
TitlePublication YearGoogle Scholar Citation Count
GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data200854
GDR (Genome Database for Rosaceae): integrated web resources for Rosaceae genomics and genetics research200462
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tagschromosome mapping expressed sequence tags genetic databases genetic markers genetics genomics plant genome research rosaceae sequence alignment systems integration

Glycosciences.deResource Content

http://www.glycosciences.de [open in a new window]

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Other Molecules > Carbohydrates

The glycosciences.de web portal provides a series of tools and databases related to glycobiology and glycomics.

This content is being maintained by luetteke.

links directory index: 86
TitlePublication YearGoogle Scholar Citation Count
GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiology research200686
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tagsapplications carbohydrate conformation carbohydrates computational biology data collection databases factual databases glycobiology glycoconjugates glycoinformatics glycomics glycoproteins humans polysaccharides research

IMCB - Fugu Genome ProjectTool Content

http://www.fugu-sg.org/ [open in a new window]

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Model Organisms > Databases
Model Organisms > Fish

Lots of information on fugu including complete draft sequence, annotations, comparative vertebrate genomics, phylogenies, publications, and information about the fugu genome project; has some very useful tools including annotation tools, an Ensembl mirror, and BLAST.

links directory index: 1759
TitlePublication YearGoogle Scholar Citation Count
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes20021097
Fugu: a compact vertebrate reference genome2000108
Generation and analysis of 25 Mb of genomic DNA from the pufferfish Fugu rubripes by sequence scanning199980
Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome1993474
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tagsanimals base sequence biological evolution computational biology conserved sequence cosmids dna dna sequence analysis dna transposable elements exons factual databases fish proteins fishes gene duplication gene library gene order genetic models genome genomics human genome humans introns japan mammals microsatellite repeats molecular evolution molecular sequence data nucleic acid repetitive sequences open reading frames phylogeny physical chromosome mapping poisonous fishes proteins proteome research satellite dna sequence alignment synteny takifugu vertebrates

MedMinerTool Content

http://discover.nci.nih.gov/host/1999_medminer_abstract.jsp [open in a new window]

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Expression > Transcript Expression Analysis
Literature > Text Mining and Semantics

MedMiner can be used to select genes from a microarray set based on GeneCards information. Based on the genes selected one can then search PubMed abstracts using known gene synonyms and other user-specified search parameters. The PubMed search can also be done independently of a microarray gene set. Results are grouped based on a set of relational keywords.

links directory index: 222
TitlePublication YearGoogle Scholar Citation Count
MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profiling1999222
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tagsfactual databases gene expression humans medline research

The Autophagy DatabaseDatabase Content

http://tp-apg.genes.nig.ac.jp/autophagy [open in a new window]

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Protein > Databases

The Autophagy database provides basic, up-to-date information on relevant literature, and a list of autophagy-related proteins and their homologs. From the database, the user can search for proteins by keywords or sequences to obtain a wealth of data including functional and structural information and find possible functional homologs of proteins whose functions have been demonstrated in other species.

links directory index: 1
TitlePublication YearGoogle Scholar Citation Count
The Autophagy Database: an all-inclusive information resource on autophagy that provides nourishment for research20111
NAR Database Issue 2011
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tagsamino acid sequence homology animals autophagy humans mice phosphatidylinositol phosphates protein databases research

webPIPSATool Content

http://pipsa.h-its.org [open in a new window]

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Protein > Annotation and Function
Protein > Molecular Dynamics and Docking

webPIPSA is the web server for Protein Interaction Property Similarity Analysis (PIPSA), a procedure for the comparison and analysis of protein electrostatic potentials for a large number of related protein structures. The resulting matrices of pairwise electrostatic similarities may be visualized as epograms or heat maps.

This content is being maintained by wade.

links directory index: 66
TitlePublication YearGoogle Scholar Citation Count
SYCAMORE--a systems biology computational analysis and modeling research environment200817
webPIPSA: a web server for the comparison of protein interaction properties200831
qPIPSA: relating enzymatic kinetic parameters and interaction fields200718
NAR Web Server Issue 2008
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tagsalgorithms binding sites biological models chemical models computer simulation electrostatics enzyme activation enzymes kinetics protein binding protein conformation protein interaction mapping proteins research signal transduction static electricity systems biology triose-phosphate isomerase

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