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Links tagged with 'protozoan proteins'

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AD-ENMTool Content

http://enm.lobos.nih.gov [open in a new window]

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Protein > Annotation and Function
Protein > Domains and Motifs
Protein > Molecular Dynamics and Docking

Analysis of Dynamics of Elastic Network Model (AD-ENM) predicts the conformational changes a given protein structure can undergo.

links directory index: 256
TitlePublication YearGoogle Scholar Citation Count
Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: myosin versus kinesin200545
Network of dynamically important residues in the open/closed transition in polymerases is strongly conserved200552
Identification of dynamical correlations within the myosin motor domain by the normal mode analysis of an elastic network model200559
A comparative study of motor-protein motions by using a simple elastic-network model2003100
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tagsactins adenosine triphosphate animals binding sites biophysical phenomena biophysics dictyostelium dna polymerase beta dna-directed rna polymerases elasticity humans kinesin ligands mice molecular conformation molecular models molecular motor proteins myosins nucleotides principal component analysis protein binding protein conformation proton-translocating atpases protozoan proteins secondary protein structure statistical models structure-activity relationship taq polymerase tertiary protein structure theoretical models thermodynamics viral proteins x-ray crystallography

dictyBase update 2011Database Content

http://www.dictybase.org [open in a new window]

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Model Organisms > Databases

dictyBase, the model organism database for Dictyostelium, provides well integrated, high quality data and tools for Dictyostelium discoideum and related species. dictyBase houses the complete genome sequence, ESTs, and the entire body of literature relevant to Dictyostelium. This information is curated to provide accurate gene models and functional annotations, with the goal of fully annotating the genome to provide a 'reference genome' in the Amoebozoa clade. New features include ortholog display and the complete integration of the Dicty Stock Center with dictyBase.

This content is being maintained by rexchisholm.

links directory index: 6
TitlePublication YearGoogle Scholar Citation Count
dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa20116
NAR Database Issue 2011
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tagsamoebozoa dictyostelium genetic databases molecular sequence annotation protozoan genome protozoan proteins systems integration

EuPathDB (formerly ApiDB)Database Content

http://EuPathDB.org [open in a new window]

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Model Organisms > Databases

EuPathDB (formerly ApiDB) is an integrated database covering the eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. The EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. EuPathDB currently supports more than 80 searches. Search results are dynamically displayed as the strategy is constructed or modified, and can be downloaded, saved, revised, or shared with other database users.

links directory index: 39
TitlePublication YearGoogle Scholar Citation Count
EuPathDB: a portal to eukaryotic pathogen databases201039
NAR Database Issue 2010
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tagsanimals computational biology genetic databases humans nucleic acid databases protein databases protozoan genome protozoan infections protozoan proteins tertiary protein structure

sgTargetTool Content

http://www.ysbl.york.ac.uk/sgTarget/ [open in a new window]

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Model Organisms > Microbes
Protein > 3-D Structure Prediction
Protein > Proteomics

sgTarget is a structural genomics resource that helps to select and prioritize good targets for structure determination from a list of sequences. Target selection is based on multiple factors including homology searches and a range of physiochemical properties.

links directory index: 5
TitlePublication YearGoogle Scholar Citation Count
sgTarget: a target selection resource for structural genomics20065
NAR Web Server Issue 2006
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tagsanimals genomics plasmodium falciparum protein conformation protein sequence analysis proteins protozoan proteins

The Mendel SiteTool Content

http://mendel.imp.ac.at/ [open in a new window]

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Protein > Biochemical Features
Protein > Domains and Motifs
Protein > Localization and Targeting

The Mendel Site contains a collection of tools for predicting lipid postranslational modifications and localization signals in protein sequences.

links directory index: 59
TitlePublication YearGoogle Scholar Citation Count
Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-Pi, NMT and PTS1200359
NAR Web Server Issue 2003
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tagsacyltransferases amino acid motifs animals eukaryotic cells fungal proteins glycine glycosylphosphatidylinositols lipid metabolism molecular sequence data myristic acids peroxisomes plant proteins post-translational protein processing protein sequence analysis protein sorting signals proteins protozoan proteins viral proteins

TriTrypDBDatabase Content

http://www.TriTrypDB.org [open in a new window]

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Model Organisms > Databases

TriTrypDB is an integrated database providing access to genome-scale datasets for kinetoplastid parasites. TriTrypDB integrates datasets from Leishmania braziliensis, L. infantum, L. major, L. tarentolae, Trypanosoma brucei and T. cruzi. Users may examine individual genes or chromosomal spans in their genomic context, including syntenic alignments with other kinetoplastid organisms. Data within TriTrypDB can be interrogated utilizing a search strategy system that enables a user to construct complex queries combining multiple data types. 'User Comments' may be added to any gene page, enhancing available annotation; such comments become immediately searchable via the text search.

links directory index: 49
TitlePublication YearGoogle Scholar Citation Count
TriTrypDB: a functional genomic resource for the Trypanosomatidae201049
NAR Database Issue 2010
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tagsanimals computational biology genetic databases leishmania nucleic acid databases protein databases protozoan genome protozoan proteins tertiary protein structure trypanosoma

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