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Links tagged with 'principal component analysis'

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AD-ENMTool Content

http://enm.lobos.nih.gov [open in a new window]

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Protein > Annotation and Function
Protein > Domains and Motifs
Protein > Molecular Dynamics and Docking

Analysis of Dynamics of Elastic Network Model (AD-ENM) predicts the conformational changes a given protein structure can undergo.

links directory index: 256
TitlePublication YearGoogle Scholar Citation Count
Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: myosin versus kinesin200545
Network of dynamically important residues in the open/closed transition in polymerases is strongly conserved200552
Identification of dynamical correlations within the myosin motor domain by the normal mode analysis of an elastic network model200559
A comparative study of motor-protein motions by using a simple elastic-network model2003100
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tagsactins adenosine triphosphate animals binding sites biophysical phenomena biophysics dictyostelium dna polymerase beta dna-directed rna polymerases elasticity humans kinesin ligands mice molecular conformation molecular models molecular motor proteins myosins nucleotides principal component analysis protein binding protein conformation proton-translocating atpases protozoan proteins secondary protein structure statistical models structure-activity relationship taq polymerase tertiary protein structure theoretical models thermodynamics viral proteins x-ray crystallography

SEWALTool Content

http://sewal.sourceforge.net/ [open in a new window]

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DNA > DNA and Genomic Analysis
Sequence Comparison > Alignment Editing and Visualization
Sequence Comparison > Multiple Sequence Alignments
Sequence Comparison > Similarity Searching and Classification

Open source tools for next generation DNA sequencing analysis and visualization.

links directory index: 3
TitlePublication YearGoogle Scholar Citation Count
SEWAL: an open-source platform for next-generation sequence analysis and visualization20103
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tagsdna sequence analysis principal component analysis

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