Links tagged with 'molecular sequence data'

Found 160 links

Displaying 161 links

TitleTypesort iconCitation CountURL
Bimas HLA Peptide Binding Predictions
1187
http://www-bimas.cit.nih.gov/molbio/hla_bind/
CRP
49
http://fasta.bioch.virginia.edu/crp/
Cascade PSI-Blast
18
http://crick.mbu.iisc.ernet.in/~CASCADE/CascadeBlast.html
Clotbase
0
http://www.clotbase.bicnirrh.res.in/
Combinatorial Extension of the Optimal Path
1542
http://cl.sdsc.edu/ce.html
DATF
164
http://datf.cbi.pku.edu.cn
ElastoDB
11
http://www.compsysbio.org/elastin/
Electronic PCR
242
http://www.ncbi.nlm.nih.gov/sutils/e-pcr
Filamentous Fungal Gene Expression Database (FFGED)
158
http://bioinfo.townsend.yale.edu/
IMGT/3Dstructure
33
http://www.imgt.org/3Dstructure-DB/
IPD
30
http://www.ebi.ac.uk/ipd/
ITS2
38
http://its2.bioapps.biozentrum.uni-wuerzburg.de/cgi-bin/index.pl?search
KEGG
653
http://www.genome.ad.jp/kegg
KEGG: Kyoto Encyclopedia of Genes and Genomes
5191
http://www.genome.ad.jp/kegg/
MEROPS
283
http://merops.sanger.ac.uk/
NDB
778
http://ndbserver.rutgers.edu/
NNDB
28
http://rna.urmc.rochester.edu/NNDB
PDBe (formerly MSD)
51
http://www.ebi.ac.uk/pdbe/
PROSITE
459
http://prosite.expasy.org/
PSORTdb
107
http://db.psort.org
PSORTdb
101
http://db.psort.org/
Pathema
7
http://pathema.jcvi.org
Pfam
11859
http://pfam.sanger.ac.uk/
PrimerBank
56
http://pga.mgh.harvard.edu/primerbank/
Pseudomonas Genome Database
2493
http://www.pseudomonas.com
Pseudomonas Genome Project
2364
http://pseudomonas.com/
Recode
21
http://recode.ucc.ie
SGD
1012
http://www.yeastgenome.org/
SYFPEITHI
1525
http://www.syfpeithi.de/
SelTarbase
13
http://www.seltarbase.org
botXminer
19
http://botdb.abcc.ncifcrf.gov/
cpnDB
73
http://www.cpndb.ca/cpnDB/home.php
3D-partner
27
http://3d-partner.life.nctu.edu.tw/
3D-pssm
1748
http://www.sbg.bio.ic.ac.uk/~3dpssm/index2.html
3Motif
20
http://motif.stanford.edu/distributions/3motif/
ASePCR
10
http://genome.ewha.ac.kr/ASePCR/
ASmodeler
24
http://genome.ewha.ac.kr/ECgene/ASmodeler/
AUGUSTUS
233
http://bioinf.uni-greifswald.de/augustus
Align-m
81
http://bioinformatics.vub.ac.be/software/software.html
AlphaPred
39
http://www.imtech.res.in/raghava/alphapred/
BTEVAL
3
http://www.imtech.res.in/raghava/bteval
BWT-SW
47
http://i.cs.hku.hk/~ckwong3/bwtsw/
Berkeley Phylogenomics Group
4963
http://phylogenomics.berkeley.edu/
BetatPred2
94
http://www.imtech.res.in/raghava/betatpred2/
BioBayesNet
33
http://biwww3.informatik.uni-freiburg.de:8080/BioBayesNet/
CE-MC
146
http://bioinformatics.albany.edu/~cemc/
CHpredict
3
http://www.imtech.res.in/raghava/chpredict
CMA
66
http://www.gene-regulation.com/pub/programs/cma/CMA.html
CPC
41
http://cpc.cbi.pku.edu.cn/programs/run_cpc.jsp
DIALIGN
1034
http://bibiserv.techfak.uni-bielefeld.de/dialign/
DINAMelt
944
http://mfold.rna.albany.edu/?q=DINAMelt
DISULFIND
252
http://disulfind.dsi.unifi.it/
DOMAC
156
http://casp.rnet.missouri.edu/domac.html
DSHIFT
33
http://www.chem.cuhk.edu.hk/DSHIFT/
Dotter
480
http://sonnhammer.sbc.su.se/Dotter.html
ELM
1035
http://elm.eu.org/
ELM
1035
http://elm.eu.org/
FASTA Programs
12295
http://fasta.bioch.virginia.edu/
FATCAT
293
http://fatcat.burnham.org/
GC-Profile
45
http://tubic.tju.edu.cn/GC-Profile/
GENSCAN
3198
http://genes.mit.edu/GENSCAN.html
Geno2pheno
363
http://www.geno2pheno.org/cgi-bin/geno2pheno.pl
GenomeNet
285
http://www.genome.ad.jp/
GlyNest and CASPER
181
http://www.glycosciences.de/sweetdb/start.php?action=form_shift_estimation
IBM Bioinformatics and Pattern Discovery Group
714
http://cbcsrv.watson.ibm.com/Tspd.html
IMCB - Fugu Genome Project
1759
http://www.fugu-sg.org/
INDELSCAN
2
http://indelscan.genomics.sinica.edu.tw/IndelScan/
ITS2
276
http://its2.bioapps.biozentrum.uni-wuerzburg.de/
Institute of Enzymology Servers
2004
http://www.enzim.hu/index.php?option=com_content&task=blogcategory&id=30&Itemid=92
JASPAR
716
http://jaspar.cgb.ki.se/cgi-bin/jaspar_db.pl
JEvTrace
845
http://www.cmpharm.ucsf.edu/~marcinj/JEvTrace/
LAGAN
749
http://lagan.stanford.edu/lagan_web/index.shtml
LTR_Finder
68
http://tlife.fudan.edu.cn/ltr_finder/
LigAlign
3
http://compbio.cs.toronto.edu/ligalign/
M4T
26
http://manaslu.aecom.yu.edu/M4T/
MAVID
329
http://bio.math.berkeley.edu/mavid/download/
MEME Suite
3841
http://meme.nbcr.net/meme/intro.html
MLST
2035
http://www.mlst.net/
Meta-MEME
223
http://metameme.sdsc.edu/
MinActionPath
21
http://lorentz.immstr.pasteur.fr/joel/index.php
Mutalyzer
76
https://mutalyzer.nl/
NDB Tools
1276
http://ndbserver.rutgers.edu/services/
NEMBASE4
335
http://www.nematodes.org/nembase4/
NetOGlyc Prediction Server
771
http://www.cbs.dtu.dk/services/NetOGlyc/
Netgene2
447
http://www.cbs.dtu.dk/services/NetGene2/
OPTIMIZER
61
http://genomes.urv.es/OPTIMIZER/
OligoWiz
175
http://www.cbs.dtu.dk/services/OligoWiz2/
PHIRE
21
http://www.biw.kuleuven.be/logt/PHIRE.htm
PI2PE
473
http://pipe.scs.fsu.edu/
PRALINE
382
http://ibivu.cs.vu.nl/programs/pralinewww/
PREP Suite
49
http://prep.unl.edu/
PROMALS and PROMALS3D
162
http://prodata.swmed.edu/promals3d
PSA
324
http://bmerc-www.bu.edu/psa/request.htm
PSEUDOVIEWER
139
http://pseudoviewer.inha.ac.kr/
PSORT.org
3330
http://www.psort.org/
Pcons.net
253
http://pcons.net/
PeptideMass
212
http://us.expasy.org/tools/peptide-mass.html
Pfold
560
http://www.daimi.au.dk/~compbio/pfold
PhyloPat
16
http://www.cmbi.ru.nl/phylopat
Pigs
23
http://www.biocomputing.it/pigs/
PipeAlign
470
http://bips.u-strasbg.fr/PipeAlign/
Primaclade
57
http://www.umsl.edu/services/kellogg/primaclade.html
Primer3
8684
http://primer3.sourceforge.net/
ProtTest
1077
http://darwin.uvigo.es/software/prottest_server.html?
Protein Peeling 3 D
26
http://www.dsimb.inserm.fr/dsimb_tools/peeling3/
QPalma
77
http://www.fml.tuebingen.mpg.de/raetsch/suppl/qpalma
QSCOP - BLAST
16
http://qscop-blast.services.came.sbg.ac.at/
RECON
35
http://wwwmgs.bionet.nsc.ru/mgs/programs/recon/
RMAP
208
http://rulai.cshl.edu/rmap/
RNABindR
166
http://bindr.gdcb.iastate.edu/RNABindR/
RNAbor
4
http://bioinformatics.bc.edu/clotelab/RNAbor/
RNAsoft
155
http://www.rnasoft.ca/
RbDe
47
http://icb.med.cornell.edu/crt/RbDe/index.xml
ReMus
22
http://140.121.196.30/remus.asp
RosettaDesign
1600
http://rosettadesign.med.unc.edu
SAGE Home Page
4128
http://www.sagenet.org/
SAPS - Statistical Analysis of Protein Sequences
342
http://www.ebi.ac.uk/Tools/saps/
SH3-Hunter
102
http://cbm.bio.uniroma2.it/SH3-Hunter/
SHORE
N/A
http://1001genomes.org/downloads/shore.html
SISSRs
233
http://dir.nhlbi.nih.gov/papers/lmi/epigenomes/sissrs/
SLiMDisc
74
http://bioware.ucd.ie/~slimdisc/
SMART
2821
http://smart.embl-heidelberg.de/
SStructView
18
http://helix-web.stanford.edu/sstructview/home.html
STING Millenium
168
http://luna.bioc.columbia.edu/SMS/STINGm/
Selecton
129
http://selecton.tau.ac.il/
Sequence Harmony
58
http://www.ibi.vu.nl/programs/seqharmwww/
Sfold
637
http://sfold.wadsworth.org
SplicePort
40
http://spliceport.cs.umd.edu/
Spritz
303
http://distill.ucd.ie/spritz/
Staden Package
763
http://staden.sourceforge.net/
SubSeqer
3
http://www.compsysbio.org/subseqer/
Swiss Model
11411
http://www.expasy.ch/swissmod/SWISS-MODEL.html
T-COFFEE
4274
http://www.tcoffee.org/
TACT
307
http://jbirc.jbic.or.jp/tact/
TFBScluster
37
http://hscl.cimr.cam.ac.uk/TFBScluster_genome_portal.html
TIGR Gene Indices
703
http://compbio.dfci.harvard.edu/tgi/
TRAMPLE
984
http://gpcr.biocomp.unibo.it/biodec/
TROD
326
http://www.cellbio.unige.ch/RNAi.html
The Mendel Site
59
http://mendel.imp.ac.at/
TopMatch
62
http://topmatch.services.came.sbg.ac.at/
TreeDet
548
http://treedetv2.bioinfo.cnio.es/treedet/index.html
TreeSAAP
78
http://dna.cs.byu.edu/treesaap/
VARID
2
http://compbio.cs.utoronto.ca/varid/
VCAKE
122
http://vcake.sourceforge.net/
WebMOTIFS
80
http://fraenkel.mit.edu/webmotifs/
WebTraceMiner
10
http://www.conifergdb.org/software/wtm1.2/
Zinc Finger Tools
984
http://www.scripps.edu/mb/barbas/zfdesign/zfdesignhome.php
eProbalign
77
http://probalign.njit.edu/probalign/login
fastSCOP
16
http://gemdock.life.nctu.edu.tw/fastSCOP/
iPDA
82
http://biominer.bime.ntu.edu.tw/ipda/
iSPOT
99
http://cbm.bio.uniroma2.it/ispot/
miPred
127
http://www.bioinf.seu.edu.cn/miRNA/
pTARGET
40
http://bioinformatics.albany.edu/~ptarget
siDirect
738
http://design.RNAi.jp/
snoGPS
224
http://lowelab.ucsc.edu/snoGPS/
taveRNA
64
http://compbio.cs.sfu.ca/taverna/
Andrej Sali Lab
627
http://salilab.org/our_resources.shtml
Berkeley Drosophila Genome Project
370
http://www.fruitfly.org/
Defining Transcriptional Programs in Vascular Endothelium
398
http://www.vessels.bwh.harvard.edu/
Genome Biology Release 3 of the Drosophila genome
1971
http://genomebiology.com/series/drosophila
RPBS
852
http://bioserv.rpbs.jussieu.fr/

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