> Tag > Links tagged with 'markov chains'

Links tagged with 'markov chains'

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Found 33 links

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TIGR Software ToolsResource Content

http://www.tigr.org/software/ [open in a new window]

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DNA > Annotations
DNA > Gene Prediction
DNA > Mapping and Assembly
DNA > Structure and Sequence Feature Detection
Expression > Transcript Expression Analysis
Sequence Comparison > Comparative Genomics

A list of open-source software packages available for free from The Institute for Genomic Research (TIGR).

links directory index: 56
TitlePublication YearGoogle Scholar Citation Count
GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders200356
NAR Web Server Issue 2003
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tagsarabidopsis dna sequence analysis eukaryotic cells exons genes introns markov chains plant genes

TRAMPLETool Content

http://gpcr.biocomp.unibo.it/biodec/ [open in a new window]

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Protein > 2-D Structure Prediction
Protein > Localization and Targeting

TRAMPLE is a tool for the prediction of transmembrane helices, transmembrane strands, secondary structure, and signal peptides.

links directory index: 984
TitlePublication YearGoogle Scholar Citation Count
TRAMPLE: the transmembrane protein labelling environment200510
A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins2002160
Prediction of the transmembrane regions of beta-barrel membrane proteins with a neural network-based predictor2001101
HTP: a neural network-based method for predicting the topology of helical transmembrane domains in proteins199625
Topology prediction for helical transmembrane proteins at 86% accuracy1996688
NAR Web Server Issue 2005
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tagsalgorithms amino acid sequence amino acid sequence homology animals bacterial outer membrane proteins biological models chemical models computer security computer simulation database management systems double-blind method escherichia coli evaluation studies as topic factual databases forecasting haemophilus influenzae humans markov chains membrane proteins molecular models molecular sequence data neural networks (computer) porins protein folding protein sequence analysis protein sorting signals reproducibility of results rhodopseudomonas secondary protein structure sequence alignment software design statistical models

VOMBATTool Content

https://www2.informatik.uni-halle.de:8443/VOMBAT/faces/pages/choose.jsp [open in a new window]

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DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation

VOMBAT predicts transcription factor binding sites (TFBS) and other motifs in sequence data based on Variable Order Markov models and variable order BAyesian Trees.

links directory index: 99
TitlePublication YearGoogle Scholar Citation Count
VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees20069
Identification of transcription factor binding sites with variable-order Bayesian networks200590
NAR Web Server Issue 2006
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tagsalgorithms artificial intelligence bayes theorem binding sites chemical models computer simulation genomics markov chains molecular models protein binding protein databases protein sequence analysis sequence alignment statistical models structure-activity relationship transcription factors transcriptional regulatory elements

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