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Links tagged with 'male'

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Found 10 links

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AUGUSTUSTool Content

http://bioinf.uni-greifswald.de/augustus [open in a new window]

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DNA > Gene Prediction
DNA > Structure and Sequence Feature Detection
Expression > Splicing
Protein > Domains and Motifs

AUGUSTUS is a eukaryotic gene prediction tool. It can integrate evidence, e.g. from RNA-Seq, ESTs, proteomics, but can also predict genes ab initio. The PPX extension to AUGUSTUS can take a protein sequence multiple sequence alignment as input to find new members of the family in a genome. It can be run through a web interface, or downloaded and run locally.

This content is being maintained by Mario Stanke.

links directory index: 233
TitlePublication YearGoogle Scholar Citation Count
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources200687
AUGUSTUS: ab initio prediction of alternative transcripts200650
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints200534
AUGUSTUS: a web server for gene finding in eukaryotes200461
The formation of deoxycholic acid in patients with type II and IV hyperlipoproteinaemia19761
NAR Web Server Issue 2004NAR Web Server Issue 2005NAR Web Server Issue 2006
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tagsadult algorithms alternative splicing animals artificial intelligence automated pattern recognition base sequence bile acids and salts cholic acids chromosome mapping computer simulation deoxycholic acid dna sequence analysis drosophila melanogaster exons female gene components gene expression genes genetic databases genetic models genetic variation genomics human genome humans hypercholesterolemia hyperlipidemias introns ldl lipoproteins male markov chains middle aged molecular sequence data proteins sequence alignment statistical models stochastic processes triglycerides vldl lipoproteins

Berkeley Drosophila Genome ProjectResource Content

http://www.fruitfly.org/ [open in a new window]

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Model Organisms > Fly

Good entrez to fly genome resources.

links directory index: 370
TitlePublication YearGoogle Scholar Citation Count
The Drosophila melanogaster genome200375
The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes2002147
A Drosophila full-length cDNA resource2002148
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tagsamino acid sequence animals base sequence cell line cluster analysis complementary dna dna sequence analysis drosophila melanogaster expressed sequence tags gene library genetic databases genome insect genes male membrane glycoproteins membrane proteins molecular sequence data rna sequence alignment testis

C programming tutorialResource Content

http://cprogramming.pickatutorial.com [open in a new window]

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Computer Related > C/C++

This C / C++ tutorial, divided into 40 lessons, has been designed to help the beginners learn the C / C++ programming language quickly. Most of the basic concepts of C / C++ programming like variables, data types, expressions, conditionals, repetitions structures, switch, functions, arrays, pointers, string handling, file handling and structures are explained in simple language. This C / C++ programming tutorial assumes no prior programming experience.

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tagsacute kidney injury adult c C++ hemofiltration humans male middle aged programming renal dialysis tutorial

CARRIETool Content

http://zlab.bu.edu/CARRIE-web [open in a new window]

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Expression > Gene Regulation
Expression > Transcript Expression Analysis

Server which analyzes microarray and promoter sequence data associated with a response to a specific stimulus. After analysis a potential transcriptional regulatory network is created. CARRIE also determines which transcription factors were likely involved in regulation and which genes they regulated.

links directory index: 30
TitlePublication YearGoogle Scholar Citation Count
CARRIE web service: automated transcriptional regulatory network inference and interactive analysis200430
Questions and answers about AIDS.19920
NAR Web Server Issue 2004
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tagsacquired immunodeficiency syndrome binding sites computational biology dna female gene expression profiling gene expression regulation genetic promoter regions genetic transcription hiv hiv infections humans male newborn infant nucleic acid regulatory sequences nurses oligonucleotide array sequence analysis physicians pregnancy transcription factors

CENTDISTTool Content

http://compbio.ddns.comp.nus.edu.sg/~chipseq/centdist/ [open in a new window]

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Expression > Gene Regulation

CENTDIST is a co-motif scanning program to identify co-transcription factors. CENTDIST ranks co-transcription factors based on their distribution around CHIP-seq peaks.

links directory index: 6
TitlePublication YearGoogle Scholar Citation Count
CENTDIST: discovery of co-associated factors by motif distribution20116
NAR Web Server Issue 2011
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tagsandrogen receptors binding sites chromatin immunoprecipitation dna sequence analysis humans male prostatic neoplasms transcription factors transcriptional regulatory elements tumor cell line

DDPCDatabase Content

http://apps.sanbi.ac.za/ddpc/ [open in a new window]

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DNA > Databases

Dragon Database of Genes associated with Prostate Cancer (DDPC) as an integrated knowledgebase of genes experimentally verified as implicated in PC. DDPC is distinctive from other databases in that (i) it provides pre-compiled biomedical text-mining information on PC, which otherwise require tedious computational analyses, (ii) it integrates data on molecular interactions, pathways, gene ontologies, gene regulation at molecular level, predicted transcription factor binding sites on promoters of PC implicated genes and transcription factors that correspond to these binding sites and (iii) it contains DrugBank data on drugs associated with PC.

links directory index: 4
TitlePublication YearGoogle Scholar Citation Count
DDPC: Dragon Database of Genes associated with Prostate Cancer20114
NAR Database Issue 2011
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tagsdata mining genetic databases humans knowledge bases male neoplasm genes prostatic neoplasms

ESTExplorerTool Content

http://estexplorer.biolinfo.org [open in a new window]

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DNA > Annotations
DNA > Structure and Sequence Feature Detection
Expression > cDNA, EST, SAGE
Protein > Annotation and Function
Protein > Domains and Motifs
Protein > Networks & Interactions, Pathways and Enzymes

ESTExplorer is an automated suite of programs to pre-process, assemble and functionally annotate ESTs at both DNA and protein level.

links directory index: 166
TitlePublication YearGoogle Scholar Citation Count
ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform200750
A hitchhiker's guide to expressed sequence tag (EST) analysis2007116
NAR Web Server Issue 2007
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tagsanimals complementary dna computational biology consensus sequence dna sequence analysis expressed sequence tags female genetic databases genomics haemonchus humans male nucleic acid databases oligonucleotide array sequence analysis programming languages untranslated regions

PolygenicPathwaysDatabase Content

http://www.polygenicpathways.co.uk [open in a new window]

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Human Genome > Databases
Human Genome > Health and Disease
Protein > Networks & Interactions, Pathways and Enzymes

The datasets list genes, environmental risk factors and autoantibodies in a number of polygenic diseases and provide KEGG pathway analysis etched out by susceptibility genes. Host/pathogen interactions are also characterised for herpes simplex, helicobacter pylori and the HIV-1/AIDS virus.

links directory index: 41
TitlePublication YearGoogle Scholar Citation Count
Schizophrenia susceptibility genes directly implicated in the life cycles of pathogens: cytomegalovirus, influenza, herpes simplex, rubella, and Toxoplasma gondii200941
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tagsaccessory nerve ADHD adrenal glands adrenocorticotropic hormone adsorption aerosols agricultural workers' diseases alzheimer's aminoglutethimide animals antithrombin iii asthma autism autoimmune diseases bacterial infections bipolar disorder brain bronchitis catalase cholesterol cholesterol side-chain cleavage enzyme cobalt coliphages conjugated (usp) estrogens copper corticosterone cycloheximide cytomegalovirus digestive system drug dose-response relationship dust epidemiology escherichia coli estrogens factor x farmer's lung female fluorescence spectrometry formic acids fungal lung diseases gastrointestinal motility gene expression regulation genetic predisposition to disease genetic transcription genetics glossopharyngeal nerve hemiplegia herpes simplex humans hydrogen peroxide hydroxycholesterols inclusion bodies intestinal obstruction male manganese menopause metabolic networks and pathways microbiology multiple sclerosis myenteric plexus nad nerve tissue proteins nervous system diseases neuronal plasticity neurotransmitter receptors nickel occupations oligodendroglia orthomyxoviridae oxidation-reduction oxygen consumption Parkinson's peripheral nervous system diseases peroxidases phenylacetates plants poliovirus polysorbates pregnancy prenatal exposure delayed effects rats regulator genes rubella virus rural health schizophrenia signal transduction signalling silicon dioxide silicosis simplexvirus syndrome thrombosis time factors toilet facilities toxoplasma vagus nerve virology virus diseases

SAGEmapDatabase Content

http://www.ncbi.nlm.nih.gov/SAGE/ [open in a new window]

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Expression > cDNA, EST, SAGE

SAGE tag to gene mapping by NCBI.

links directory index: 435
TitlePublication YearGoogle Scholar Citation Count
SAGEmap: a public gene expression resource2000435
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tagscomputer-assisted signal processing dna sequence analysis factual databases female gene expression gene library humans male sequence tagged sites
setsNational Center for Biotechnology Information (NCBI)

SNPinfoTool Content

http://www.niehs.nih.gov/snpinfo [open in a new window]

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DNA > Sequence Polymorphisms
Expression > Gene Regulation
Expression > Splicing
Protein > 3-D Structure Prediction
RNA > Functional RNAs

A suite of web=based tools for SNP detection. Functional predictions of SNP affect on protein structure, gene regulation, splicing and miRNA binding are incorporated.

links directory index: 60
TitlePublication YearGoogle Scholar Citation Count
SNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studies200960
NAR Web Server Issue 2009
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tagsbinding sites genes genetic linkage genetic predisposition to disease genome genome-wide association study humans male micrornas prostatic neoplasms reproducibility of results rna splice sites single nucleotide polymorphism systems integration transcription factors

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