http://bioinformatics.ca/links_directory/tag/genehttp://bioinformatics.ca/links_directory/tag/gene/feed en http://www.topogsa.netTopoGSA (Topology-based Gene Set Analysis) is a web-application dedicated to the computation and visualization of network topological properties for gene and protein sets in molecular interaction networks. Different topological characteristics, such as the centrality of nodes in the network or their tendency to form clusters, can be computed and compared with those of known cellular pathways and processes (Gene Ontology, BioCarta, KEGG, among others). For a detailed description, please refer to the corresponding publication in Bioinformatics (http://bioinformatics.oxfordjournals.org/content/26/9/1271).13439Mon, 20 May 2013 08:20:17 -0400 http://text0.mib.man.ac.uk/software/mldic/Smart Dictionary Lookup will retrieve relevant UniProt IDs from BioThesaurus entries using a soft string matching algorithm.12443Fri, 20 Jul 2012 15:16:21 -0400 http://text0.mib.man.ac.uk/~sasaki/bootstrep/nemine.htmlRecognises gene and protein names in biomedical text.12439Sun, 19 May 2013 07:30:14 -0400 http://phyleasprog.inra.frPhyleasProg is a web server for evolutionary analyses. Users input a list of Ensembl protein IDs and a list of species as inputs.12117Tue, 21 May 2013 07:10:08 -0400 http://www.funsimmat.deFunSimMat is a functional similarity database and web service for ranking genes/proteins by function. It provides different semantic similarity measures for Gene Ontology terms and offers functional similarity values for proteins contained in UniProtKB and for protein families/domains in Pfam and SMART. Users can perform semantic similarity searches with GO terms and functional similarity searches with proteins or protein families. FunSimMat also supports prioritizing disease gene candidates.11654Tue, 21 May 2013 05:00:26 -0400