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Links tagged with 'false positive reactions'

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IntActDatabase Content

http://www.ebi.ac.uk/intact/ [open in a new window]

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Protein > Databases

IntAct is molecular interaction database and toolkit. Data is abstracted from the literature or from direct data depositions by expert curators following a deep annotation model providing a high level of detail. The search interface allows the user to iteratively develop complex queries, exploiting the detailed annotation with hierarchical controlled vocabularies. Results are provided at any stage in a simplified, tabular view.

links directory index: 271
TitlePublication YearGoogle Scholar Citation Count
The IntAct molecular interaction database in 2012201214
The IntAct molecular interaction database in 20102010257
NAR Database Issue 2010
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tagsanimals computational biology controlled vocabulary false positive reactions genetic databases humans programming languages protein databases protein interaction mapping proteins tertiary protein structure

MINERTool Content

http://coit-apple01.uncc.edu/MINER/ [open in a new window]

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Protein > 3-D Structure Retrieval/Viewing
Protein > Annotation and Function
Protein > Phylogeny Reconstruction
Sequence Comparison > Analysis of Aligned Sequences

MINER is a tool for the identification and visualization of phylogenetic motifs (regions within a multiple sequence alignment (MSA) that conserve the overall phylogeny of the complete family).

links directory index: 69
TitlePublication YearGoogle Scholar Citation Count
MINER: software for phylogenetic motif identification200517
Predicting protein functional sites with phylogenetic motifs200552
NAR Web Server Issue 2005
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tagsamino acid motifs base sequence binding sites chemical models computational biology conserved sequence cytochrome p-450 enzyme system false positive reactions fungal proteins molecular evolution molecular models phylogeny protein binding protein conformation protein databases protein sequence analysis proteins proteomics saccharomyces cerevisiae sequence alignment succinate dehydrogenase

miPredTool Content

http://www.bioinf.seu.edu.cn/miRNA/ [open in a new window]

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RNA > Functional RNAs

miPred (microRNA Predictor) can distinguish between real and pseudo microRNA precursors.

links directory index: 127
TitlePublication YearGoogle Scholar Citation Count
MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features2007127
NAR Web Server Issue 2007
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tagsanimals base sequence computational biology computer simulation false positive reactions genome genomics humans messenger rna micrornas molecular sequence data nucleic acid conformation species specificity

PeakSeqTool Content

http://archive.gersteinlab.org/proj/PeakSeq/ [open in a new window]

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DNA > Mapping and Assembly
Expression > Gene Regulation
Expression > Transcript Expression Analysis

PeakSeq is a program for identifying and ranking peak regions in ChIP-Seq experiments. It takes as input, mapped reads from a ChIP-Seq experiment, mapped reads from a control experiment and outputs a file with peak regions ranked with increasing Q-values.

links directory index: 216
TitlePublication YearGoogle Scholar Citation Count
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls2009216
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tagsbinding sites biotechnology chromatin chromatin immunoprecipitation dna dna sequence analysis false positive reactions genetic models genetic variation genome genomics humans oligonucleotide array sequence analysis rna polymerase ii

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