> Tag > Links tagged with 'factual databases'

Links tagged with 'factual databases'

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Found 60 links

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BCM Search LauncherResource Content

http://searchlauncher.bcm.tmc.edu/ [open in a new window]

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DNA > DNA and Genomic Analysis
Protein > Do-it-all Tools for Protein

Molecular biology-related search and analysis services organized by function; single point-of-entry for related searches (e.g., a single page for launching protein sequence searches using standard parameters).

links directory index: 355
TitlePublication YearGoogle Scholar Citation Count
BCM Search Launcher--an integrated interface to molecular biology data base search and analysis services available on the World Wide Web1996355
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tagsanimals database management systems factual databases humans molecular biology

BIND - The Biomolecular Interaction Network DatabaseDatabase Content

http://bond.unleashedinformatics.com/Action [open in a new window]

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Protein > Networks & Interactions, Pathways and Enzymes

Stores full descriptions of interactions, molecular complexes and pathways; researchers are able to submit new records.

links directory index: 932
TitlePublication YearGoogle Scholar Citation Count
BIND: the Biomolecular Interaction Network Database2003752
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways2000180
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tagsamino acid sequence animals dna factual databases humans macromolecular substances molecular biology protein databases protein interaction mapping proteins rna sequence alignment statistical models tertiary protein structure

BioDBcoreDatabase Content

http://biocurator.org/biodbcore.shtml [open in a new window]

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BioDBCore is a community-defined, uniform, generic description of the core attributes of biological databases.

This content is being maintained by pgaudet.

links directory index: 17
TitlePublication YearGoogle Scholar Citation Count
Towards BioDBcore: a community-defined information specification for biological databases201117
NAR Database Issue 2011
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tagsfactual databases information dissemination

BioMart CentralDatabase Content

http://central.biomart.org/ [open in a new window]

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DNA > DNA and Genomic Analysis
Human Genome > Other Resources
Model Organisms > Databases
Protein > Proteomics

BioMart Central Portal is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. The system also simplifies cross-database searches that might otherwise require several complicated steps.

links directory index: 9
TitlePublication YearGoogle Scholar Citation Count
BioMart Central Portal: an open database network for the biological community20119
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tagsanimals bacteria biomedical research database management systems factual databases fungi genome humans international cooperation viruses

BRENDA - The Comprehensive Enzyme Information SystemDatabase Content

http://www.brenda-enzymes.org/ [open in a new window]

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Protein > Networks & Interactions, Pathways and Enzymes

Information about reaction and specificity, post-translational modifications, structure, stability, and references to other databases; free for academics.

links directory index: 792
TitlePublication YearGoogle Scholar Citation Count
BRENDA, AMENDA and FRENDA: the enzyme information system in 20072007115
BRENDA, the enzyme database: updates and major new developments2004347
BRENDA: a resource for enzyme data and metabolic information2002104
BRENDA, enzyme data and metabolic information2002226
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tagsanimals enzymes factual databases genomics humans ligands membrane proteins organ specificity protein conformation protein databases protein transport rats substrate specificity systems integration terminology as topic

ChEBIDatabase Content

http://www.ebi.ac.uk/chebi/ [open in a new window]

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Other Molecules > Databases

Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds. The molecular entities in question are either natural products or synthetic products used to intervene in the processes of living organisms. In addition to molecular entities, ChEBI contains groups (parts of molecular entities) and classes of entities.

links directory index: 97
TitlePublication YearGoogle Scholar Citation Count
Chemical Entities of Biological Interest: an update201097
NAR Database Issue 2010
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external linksLink on Wikipedia
tagsagrochemicals animals biological products chemical dictionaries computational biology controlled vocabulary factual databases humans pharmaceutical preparations
setsEuropean Bioinformatics Institute (EBI)

ChemProtDatabase Content

http://www.cbs.dtu.dk/services/ChemProt/ [open in a new window]

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Other Molecules > Databases
Protein > Databases

ChemProt, a disease chemical biology database, which is based on a compilation of multiple chemical-protein annotation resources, as well as disease-associated protein-protein interactions (PPIs). The PPI network layer allows for studying disease and tissue specificity through each protein complex. ChemProt can assist in the in silico evaluation of environmental chemicals, natural products and approved drugs, as well as the selection of new compounds based on their activity profile against most known biological targets, including those related to adverse drug events.

This content is being maintained by otab.

links directory index: 10
TitlePublication YearGoogle Scholar Citation Count
ChemProt: a disease chemical biology database201110
NAR Database Issue 2011
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external linksLink on Wikipedia
tagsdisease drug discovery factual databases genes humans pharmaceutical preparations protein interaction mapping proteins

ClotbaseDatabase Content

http://www.clotbase.bicnirrh.res.in/ [open in a new window]

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Protein > Databases

ClotBase is a curated knowledgebase on the proteins that are involved in the blood coagulation pathway. It contains information on sequence, accession number, source, taxonomy, keywords, function, subcellular location, tissue specificity, associated diseases , mutation and links to external databases

links directory index: 0
TitlePublication YearGoogle Scholar Citation Count
ClotBase: a knowledgebase on proteins involved in blood coagulation.20100
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tagsamino acid sequence animals blood coagulation blood coagulation disorders blood coagulation factors blood proteins consensus sequence factual databases genetic databases humans molecular sequence data mutation mutation prediction mutations protein conformation protein databases proteins sequence alignment

Codon Usage DatabaseDatabase Content

http://www.kazusa.or.jp/codon/ [open in a new window]

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DNA > Structure and Sequence Feature Detection
Model Organisms > General Resources

Find GC content and frequency of codon usage for any organism that has a sequence in GenBank.

links directory index: 614
TitlePublication YearGoogle Scholar Citation Count
Codon usage tabulated from international DNA sequence databases: status for the year 20002000614
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tagscodon factual databases

ConsensusPathDBDatabase Content

http://cpdb.molgen.mpg.de [open in a new window]

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Human Genome > Databases
Model Organisms > Databases
Protein > Databases

ConsensusPathDB is a meta-database that integrates physical protein interactions, metabolic and signaling reactions and gene regulatory interactions in a seamless functional association network that simultaneously describes multiple functional aspects of genes, proteins, complexes, metabolites, etc. ConsensusPathDB offers different ways of utilizing these integrated interaction data, with tools for visualization, analysis and interpretation of high-throughput expression data in the light of functional interactions and biological pathways.

links directory index: 15
TitlePublication YearGoogle Scholar Citation Count
ConsensusPathDB: toward a more complete picture of cell biology201115
NAR Database Issue 2011
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external linksLink on Wikipedia
tagsanimals factual databases gene expression gene regulatory networks genetic databases humans metabolic networks and pathways mice protein interaction mapping signal transduction

dbCRIDDatabase Content

http://dbCRID.biolead.org [open in a new window]

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DNA > Databases

A database of Chromosomal Rearrangements In Diseases (dbCRID, http://dbCRID.biolead.org) is a database of human CR events and their associated diseases. For each reported CR event, dbCRID documents the type of the event, the disease or symptoms associated, and--when possible--detailed information about the CR event including precise breakpoint positions, junction sequences, genes and gene regions disrupted and experimental techniques applied to discover/analyze the CR event.

This content is being maintained by tongbinli.

links directory index: 1
TitlePublication YearGoogle Scholar Citation Count
dbCRID: a database of chromosomal rearrangements in human diseases20111
NAR Database Issue 2011
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external linksLink on Wikipedia
tagschromosome aberrations chromosome breakpoints disease factual databases humans neoplasms

Defining Transcriptional Programs in Vascular EndotheliumResource Content

http://www.vessels.bwh.harvard.edu/ [open in a new window]

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Expression > Gene Regulation
Expression > Transcript Expression Analysis

This website contains microarray analysis software (Argus and Z-pool), an Endothelial Cell Expression Database, and other resources related to Vascular Endothelium research. See the PubMed abstracts for more information.

links directory index: 398
TitlePublication YearGoogle Scholar Citation Count
Improving the statistical detection of regulated genes from microarray data using intensity-based variance estimation200426
Biomechanical activation of vascular endothelium as a determinant of its functional phenotype2001355
Argus--a new database system for Web-based analysis of multiple microarray data sets200117
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tagsbase sequence biomechanics complementary dna cultured cells dna primers factual databases gene expression profiling humans molecular sequence data nucleic acid hybridization oligonucleotide array sequence analysis phenotype reproducibility of results statistics as topic vascular endothelium

DrugBank 3.0Database Content

http://www.drugbank.ca [open in a new window]

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Other Molecules > Databases

DrugBank is a richly annotated database of drug and drug target information. It contains extensive data on the nomenclature, ontology, chemistry, structure, function, action, pharmacology, pharmacokinetics, metabolism and pharmaceutical properties of both small molecule and large molecule (biotech) drugs. It also contains comprehensive information on the target diseases, proteins, genes and organisms on which these drugs act. New data field additions include illustrated drug-action pathways, drug transporter data, drug metabolite data, pharmacogenomic data, adverse drug response data, ADMET data, pharmacokinetic data, computed property data and chemical classification data. DrugBank 3.0 also offers expanded database links, improved search tools for drug-drug and food-drug interaction, new resources for querying and viewing drug pathways and hundreds of new drug entries with detailed patent, pricing and manufacturer data.

links directory index: 120
TitlePublication YearGoogle Scholar Citation Count
DrugBank 3.0: a comprehensive resource for 'omics' research on drugs2011120
NAR Database Issue 2011
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tagsfactual databases metabolomics pharmaceutical preparations pharmacogenetics pharmacological processes proteomics

EBI patent sequence databaseDatabase Content

http://www.ebi.ac.uk/patentdata/nr/ [open in a new window]

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DNA > Databases

The EBI Patent Sequence Database is a collection of non-redundant patent sequence databases, which cover the EMBL-Bank nucleotides patent class and the patent protein databases and contain value-added annotations from patent documents.

links directory index: 3
TitlePublication YearGoogle Scholar Citation Count
Non-redundant patent sequence databases with value-added annotations at two levels20103
NAR Database Issue 2010
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tagsalgorithms animals biotechnology computational biology europe factual databases gene expression profiling genetic databases humans patents as topic protein databases
setsEuropean Bioinformatics Institute (EBI)

EDULISSDatabase Content

http://eduliss.bch.ed.ac.uk/ [open in a new window]

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Other Molecules > Databases

EDULISS (EDinburgh University Ligand Selection System) database stores structural, physicochemical and pharmacophoric properties of small molecules. For each compound a single 3D conformer is stored along with over 1600 calculated descriptor values (molecular properties). A very efficient method for unique compound recognition is demonstrated by making use of small subgroups of the descriptors.

links directory index: 4
TitlePublication YearGoogle Scholar Citation Count
EDULISS: a small-molecule database with data-mining and pharmacophore searching capabilities20114
NAR Database Issue 2011
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tagscyclin-dependent kinases data mining enzyme inhibitors factual databases pharmaceutical preparations protein kinase inhibitors pyruvate kinase small molecule libraries

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