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Links tagged with 'enzymes'

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BRENDADatabase Content

http://www.brenda-enzymes.org [open in a new window]

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Protein > Databases

The BRENDA (BRaunschweig ENzyme Database) enzyme information system is a collection of enzyme functional and property data, manually extracted from the primary literature. The content covers information on function, structure, occurrence, preparation and application of enzymes as well as properties of mutants and engineered variants. New query, analysis and data management tools were implemented to improve data processing, data presentation, data input and data access. BRENDA now provides new viewing options such as the display of the statistics of functional parameters and the 3D view of protein sequence and structure features. A ligand summary shows comprehensive information on the BRENDA ligands. The enzymes are linked to their respective pathways and can be viewed in pathway maps.

This content is being maintained by Dietmar Schomburg.

links directory index: 60
TitlePublication YearGoogle Scholar Citation Count
BRENDA, the enzyme information system in 2011201160
NAR Database Issue 2011
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external linksLink on Wikipedia
tagsenzymes ligands metabolic networks and pathways protein conformation protein databases

BRENDA - The Comprehensive Enzyme Information SystemDatabase Content

http://www.brenda-enzymes.org/ [open in a new window]

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Protein > Networks & Interactions, Pathways and Enzymes

Information about reaction and specificity, post-translational modifications, structure, stability, and references to other databases; free for academics.

links directory index: 792
TitlePublication YearGoogle Scholar Citation Count
BRENDA, AMENDA and FRENDA: the enzyme information system in 20072007115
BRENDA, the enzyme database: updates and major new developments2004347
BRENDA: a resource for enzyme data and metabolic information2002104
BRENDA, enzyme data and metabolic information2002226
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tagsanimals enzymes factual databases genomics humans ligands membrane proteins organ specificity protein conformation protein databases protein transport rats substrate specificity systems integration terminology as topic

ENZYME - Enzyme nomenclature databaseDatabase Content

http://us.expasy.org/enzyme/ [open in a new window]

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Protein > Networks & Interactions, Pathways and Enzymes

Repository of enzyme nomenclature information; useful selection of cross references to other databases; free for research purposes only.

links directory index: 529
TitlePublication YearGoogle Scholar Citation Count
The ENZYME database in 20002000529
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tagsenzymes factual databases terminology as topic

ExPASy Molecular Biology ServerResource Content

http://www.expasy.org/ [open in a new window]

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Education > Directories and Portals
Protein > Do-it-all Tools for Protein

ExPASy is the bioinformatics resource portal for access to programs and databases for the analysis of proteomics, genomics, phylogeny, systems biology, population genetics, transcriptomics etc.

links directory index: 1342
TitlePublication YearGoogle Scholar Citation Count
ExPASy: The proteomics server for in-depth protein knowledge and analysis20031342
NAR Web Server Issue 2003NAR Web Server Issue 2012
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tagsenzymes gel electrophoresis internet molecular models protein conformation protein databases protein sequence analysis proteins proteomics software systems integration user-computer interface

KEGGDatabase Content

http://www.genome.ad.jp/kegg [open in a new window]

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Model Organisms > Databases

The KEGG PATHWAY database contains pathway maps for the molecular systems in both normal and perturbed states. In the KEGG DISEASE database, each disease is represented by a list of known disease genes, any known environmental factors at the molecular level, diagnostic markers and therapeutic drugs, which may reflect the underlying molecular system. The KEGG DRUG database contains chemical structures and/or chemical components of all drugs in Japan, including crude drugs and TCM (Traditional Chinese Medicine) formulas, and drugs in the USA and Europe. The new disease/drug information resource named KEGG MEDICUS can be used as a reference knowledge base for computational analysis of molecular networks, especially, by integrating large-scale experimental datasets.

links directory index: 653
TitlePublication YearGoogle Scholar Citation Count
KEGG for integration and interpretation of large-scale molecular data sets201235
KEGG for representation and analysis of molecular networks involving diseases and drugs2010618
NAR Database Issue 2010
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external linksLink on Wikipedia
tagsalgorithms animals biotransformation carbohydrate sequence chemical phenomena chemistry computational biology computer communication networks disease environment enzymes factual databases genes genetic databases genome genomics human genome human genome project humans information storage and retrieval internet japan knowledge bases ligands metabolism molecular biology molecular sequence annotation molecular sequence data nucleic acid databases pharmaceutical preparations pharmacological phenomena protein binding protein databases protein interaction mapping proteins signal transduction software systems biology systems integration tertiary protein structure user-computer interface

The BRENDA Tissue Ontology (BTO)Database Content

http://www.BTO.brenda-enzymes.org [open in a new window]

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Other Molecules > Databases

BTO, the BRENDA Tissue Ontology is a structured encyclopedia of tissue terms. BTO contains different anatomical structures, tissues, cell types and cell lines, classified under generic categories corresponding to the rules and formats of the Gene Ontology Consortium and organized as a directed acyclic graph (DAG). Most of the terms are endowed with comments on their derivation or definitions. Four different types of relationships between the terms are implemented. A versatile web interface with several search and navigation functionalities allows convenient online access to the BTO and to the enzymes isolated from the tissues.

This content is being maintained by Dietmar Schomburg.

links directory index: 5
TitlePublication YearGoogle Scholar Citation Count
The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources20115
NAR Database Issue 2011
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tagscell line cells controlled vocabulary dictionaries as topic enzymes factual databases systems integration

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