Links tagged with 'drosophila proteins'

Found 14 links

Displaying 14 links

DroIDDatabase Content

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DroID, the Drosophila Interactions Database, is a comprehensive public resource for Drosophila gene and protein interactions. DroID contains genetic interactions and experimentally detected protein-protein interactions curated from the literature and from external databases, and predicted protein interactions based on experiments in other species. Protein interactions are annotated with experimental details and periodically updated confidence scores. The database now includes transcription factor-gene and regulatory RNA-gene interactions. Orthologous gene mappings of Drosophila genes to other organisms are also available to facilitate finding interactions based on gene names and identifiers for a number of common model organisms and humans.

E-RNAiTool Content

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E-RNAi is a tool for designing and evaluating dsRNA constructs suitable for RNAi experiments in 12 organisms including Drosophila, C. elegans, human and other emerging model organisms. E-RNAi also facilitates the design of secondary RNAi reagents for validation experiments, evaluation of pooled siRNA reagents and batch design.

FlyFactorSurveyDatabase Content

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FlyFactorSurvey is a database of DNA binding specificities for Drosophila transcription factors (TFs) determined using the bacterial one-hybrid system. The database provides to recognition motifs and position weight matrices for TFs. Search tools and flat file downloads are provided to retrieve binding site information (as sequences, matrices and sequence logos) for individual TFs, groups of TFs or for all TFs with characterized binding specificities. Linked analysis tools allow users to identify motifs within our database that share similarity to a query matrix or to view the distribution of occurrences of an individual motif throughout the Drosophila genome.

FlyTFDatabase Content

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FlyTF is a database of computationally predicted and/or experimentally verified site-specific transcription factors (TFs) in the fruit fly Drosophila melanogaster. This database contains information on the manual curation of 1052 FlyBase identifiers, which are putative site-specific transcription factors, based on FlyBase/Gene Ontology annotation or the DBD Transcription Factor Database.

GBrowseTool Content

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GBrowse is a combination of database and interactive web pages for manipulating and displaying annotations on genomes.

Genome Biology Release 3 of the Drosophila genomeResource Content

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A series of refereed research articles describing Release 3 of the Drosophila genome are freely available online. The articles describe the finishing and annotation of the genome sequence, computational tools, and functional studies.

RBPDBDatabase Content

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The RNA-Binding Protein DataBase (RBPDB) is a collection of experimental observations of RNA-binding sites, both in vitro and in vivo, manually curated from primary literature. The database is accessible by a web interface which allows browsing by domain or by organism, searching and export of records, and bulk data downloads. Users can also use RBPDB to scan sequences for RBP-binding sites.

links directory index: 8
TitlePublication YearGoogle Scholar Citation Count
RBPDB: a database of RNA-binding specificities20118

REDflyDatabase Content

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The REDfly database of Drosophila transcriptional cis-regulatory elements provides experimentally validated cis-regulatory modules and transcription factor binding sites. The user interface is designed for access by both causal and power users and is intended as a tool for facilitating computational as well as experimental studies of transcriptional regulation.

This content is being maintained by halfon.

REDflyDatabase Content

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Regulatory Element Database for Drosophila (REDfly) is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs). REDfly seeks to include all experimentally verified fly CRMs along with their DNA sequence, their associated genes, and the expression patterns they direct.

This content is being maintained by halfon.

RNSCTool Content

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Restricted Neighborhood Search Clustering Algorithm (RNSC): efficiently partitions networks into clusters using a cost function. Used to detect known and predict still undiscovered protein complexes within the cell's protein-protein interaction (PPI) network. The increasing amount of available PPI data necessitates an accurate and scalable approach to protein complex identification.

links directory index: 275
TitlePublication YearGoogle Scholar Citation Count
Protein complex prediction via cost-based clustering2004275

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