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Links tagged with 'disulfides'

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Found 6 links

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DBCPTool Content

http://120.107.8.16/dbcp [open in a new window]

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Protein > 3-D Structural Features
Protein > 3-D Structure Prediction

The Disulfide Bonding Connectivity Pattern (DBCP) web server tool provides prediction of disulphide bonding connectivity patterns without the prior knowledge of the bonding states of cysteines. Useful in locating disulphide bridges and helping to solve protein folding.

links directory index: 7
TitlePublication YearGoogle Scholar Citation Count
DBCP: a web server for disulfide bonding connectivity pattern prediction without the prior knowledge of the bonding state of cysteines20107
NAR Web Server Issue 2010
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tagscysteine disulfides protein conformation protein folding protein sequence analysis proteins reproducibility of results

DiANNATool Content

http://bioinformatics.bc.edu/clotelab/DiANNA/ [open in a new window]

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Protein > Biochemical Features
Protein > Sequence Features

DiANNA (DiAminoacid Neural Network Application) a tool that predicts cysteine states of a protein. It can predict whether a particular cysteine is reduced, is forming a disulfide bond, or is bound to a metallic ligand.

links directory index: 89
TitlePublication YearGoogle Scholar Citation Count
DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification200625
DiANNA: a web server for disulfide connectivity prediction200564
Disulfide connectivity prediction using secondary structure information and diresidue frequencies.20050
NAR Web Server Issue 2005NAR Web Server Issue 2006
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tagsalgorithms artificial intelligence binding sites chemical models computer simulation cysteine disulfides neural networks (computer) oxidation-reduction protein binding protein conformation protein interaction mapping protein sequence analysis proteins secondary protein structure sequence alignment structure-activity relationship

DISULFINDTool Content

http://disulfind.dsi.unifi.it/ [open in a new window]

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Protein > Biochemical Features
Protein > Sequence Features

DISULFIND is a server for predicting the disulfide bonding state of cysteines and their disulfide connectivity given a protein sequence.

This content is being maintained by paolo.frasconi.

links directory index: 252
TitlePublication YearGoogle Scholar Citation Count
MetalDetector v2.0: predicting the geometry of metal binding sites from protein sequence20111
MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence200825
DISULFIND: a disulfide bonding state and cysteine connectivity prediction server200689
Disulfide connectivity prediction using recursive neural networks and evolutionary information2004137
NAR Web Server Issue 2006
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tagsalgorithms amino acid sequence artificial intelligence binding sites computational biology computer simulation cysteine disulfide bridges disulfides gene expression profiling histidine machine learning metalloproteins molecular evolution molecular sequence data neural networks (computer) protein binding protein databases protein sequence analysis proteins sequence alignment

GDAPTool Content

http://www.doe-mbi.ucla.edu/Services/GDAP [open in a new window]

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Protein > Biochemical Features
Protein > Sequence Features

The Genomic Disulfide Analysis Program (GDAP) predicts disulfide bonds for a user-supplied protein sequence. GDAP also provides access to pre-computed predictions of disulfide bonds for over 100 microbial genomes.

links directory index: 24
TitlePublication YearGoogle Scholar Citation Count
GDAP: a web tool for genome-wide protein disulfide bond prediction200424
NAR Web Server Issue 2004
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tagsarchaeal genome archaeal proteins bacterial genome bacterial proteins cysteine disulfides protein sequence analysis statistical data interpretation

SCRATCHTool Content

http://www.igb.uci.edu/servers/psss.html [open in a new window]

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Protein > 2-D Structure Prediction
Protein > 3-D Structural Features
Protein > Domains and Motifs

SCRATCH is a suite of protein structure software and servers for the prediction of secondary structure, solvent accessibility, disulphide bridges, stability effects of single amino acid mutations, disordered regions, domains, beta-residue and beta-strand pairings, amino acid contact maps, and tertiary structure.

links directory index: 295
TitlePublication YearGoogle Scholar Citation Count
SCRATCH: a protein structure and structural feature prediction server2005295
NAR Web Server Issue 2005
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tagsdisulfides mutation protein conformation proteins secondary protein structure solvents tertiary protein structure

SDPMODTool Content

http://proline.bic.nus.edu.sg/sdpmod/ [open in a new window]

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Protein > 3-D Structure Prediction

SDPMOD is a comparative modelling tool for small disulfide-bonded proteins (SDPs).

links directory index: 16
TitlePublication YearGoogle Scholar Citation Count
SDPMOD: an automated comparative modeling server for small disulfide-bonded proteins200416
NAR Web Server Issue 2004
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tagsconotoxins cysteine disulfides molecular models protein structural homology proteins reproducibility of results

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