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Open Bioinformatics Foundation Set

Resources, databases, and tools maintained by Open Bioinformatics Foundation

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BioDASResource Content

http://biodas.org/ [open in a new window]

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Computer Related > Bio-* Programming Tools

This site is the center of development of an Open Source system for exchanging annotations on genomic sequence data.

links directory index: 384
TitlePublication YearGoogle Scholar Citation Count
The distributed annotation system2001384
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tagsbase sequence computational biology computer terminals genetic databases human genome humans reference values
setsOpen Bioinformatics Foundation

BioJavaTool Content

http://www.biojava.org/ [open in a new window]

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Computer Related > Bio-* Programming Tools
Computer Related > Java

The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.

links directory index: 0
TitlePublication YearGoogle Scholar Citation Count
The Bio* toolkits--a brief overview.20020
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external linksLink on Wikipedia
setsOpen Bioinformatics Foundation

BioMobyTool Content

http://biomoby.org/ [open in a new window]

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Computer Related > Bio-* Programming Tools

BioMOBY is an international research project involving biological data hosts, biological data service providers, and coders whose aim is to explore various methodologies for biological data representation, distribution, and discovery.

links directory index: 405
TitlePublication YearGoogle Scholar Citation Count
Moby and Moby 2: creatures of the deep (web)200920
Semi-automatic web service composition for the life sciences using the BioMoby semantic web framework200833
BioMOBY: an open source biological web services proposal2002352
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external linksLink on Wikipedia
tagsdatabase management systems humans international cooperation nucleic acid databases
setsOpen Bioinformatics Foundation

BioPerlTool Content

http://www.bioperl.org/ [open in a new window]

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Computer Related > Bio-* Programming Tools
Computer Related > PERL

The BioPerl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research.

links directory index: 860
TitlePublication YearGoogle Scholar Citation Count
The Bioperl toolkit: Perl modules for the life sciences2002860
The Bio* toolkits--a brief overview.20020
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external linksLink on Twitter Link on Wikipedia
setsOpen Bioinformatics Foundation

BioPythonTool Content

http://biopython.org/ [open in a new window]

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Computer Related > Bio-* Programming Tools

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.

links directory index: 61
TitlePublication YearGoogle Scholar Citation Count
PDB file parser and structure class implemented in Python200361
The Bio* toolkits--a brief overview.20020
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external linksLink on Twitter Link on Wikipedia
setsOpen Bioinformatics Foundation

BioRubyTool Content

http://bioruby.org/ [open in a new window]

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Computer Related > Bio-* Programming Tools

The BioRuby project aims to implement an integrated environment for bioinformatics with Ruby.

links directory index: 20
TitlePublication YearGoogle Scholar Citation Count
BioRuby: bioinformatics software for the Ruby programming language201020
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external linksLink on Wikipedia
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Open Bioinformatics FoundationResource Content

http://www.open-bio.org/ [open in a new window]

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Computer Related > Bio-* Programming Tools
Education > Community

The Open Bioinformatics Foundation is a non profit, volunteer run organization focused on supporting open source programming in bioinformatics.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count
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external linksLink on Twitter Link on Wikipedia
setsOpen Bioinformatics Foundation

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