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Analysis of Aligned Sequences

Resources for the interpretation of the results of comparing sets of sequences. Includes tools for functional inference from multispecies comparisons.

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Found 71 links

Displaying 71 links

TitleTypeCitation CountURL
AGenDA
11
http://bibiserv.techfak.uni-bielefeld.de/agenda/
ALGGEN
276
http://alggen.lsi.upc.es/
ASmodeler
24
http://genome.ewha.ac.kr/ECgene/ASmodeler/
Berkeley Phylogenomics Group
4963
http://phylogenomics.berkeley.edu/
Blocks WWW Server
597
http://blocks.fhcrc.org/
CAMPO
4
http://schubert.bio.uniroma1.it/CAMPO/index.html
CGView Server
36
http://stothard.afns.ualberta.ca/cgview_server/
CHC_FIND
4
http://schubert.bio.uniroma1.it/CHC_FIND/index.html
ClanTox
4
http://www.clantox.cs.huji.ac.il
COMPASS
283
http://prodata.swmed.edu/compass/compass.php
ConSurf
1112
http://consurf.tau.ac.il/
CorreLogo
19
http://correlogo.abcc.ncifcrf.gov/
CRASP
34
http://wwwmgs.bionet.nsc.ru/mgs/programs/crasp/
CSTminer
27
http://www.caspur.it/CSTminer/
ECR Browser
222
http://ecrbrowser.dcode.org/
EMBL-EBI Framework
53
http://www.ebi.ac.uk/Tools/sss
ENDscript
437
http://espript.ibcp.fr/ESPript/ENDscript/index.php
eProbalign
77
http://probalign.njit.edu/probalign/login
eShadow
64
http://eshadow.dcode.org/
FeatureMap3D
11
http://www.cbs.dtu.dk/services/FeatureMap3D/
FFAS
271
http://ffas.godziklab.org
FGF
3
http://fgf.genomics.org.cn/service/index.jsp
GeneZilla
41
http://www.genezilla.org
GenomeTraFaC
20
http://genometrafac.cchmc.org/genome-trafac/index.jsp
GOblet
169
http://goblet.molgen.mpg.de/
Godzilla
N/A
http://pipeline.lbl.gov/cgi-bin/gateway2
Harmony
13
http://caps.ncbs.res.in/harmony/
IndelFR
2
http://indel.bioinfo.sdu.edu.cn/gridsphere/gridsphere
INDELSCAN
2
http://indelscan.genomics.sinica.edu.tw/IndelScan/
JEvTrace
845
http://www.cmpharm.ucsf.edu/~marcinj/JEvTrace/
Kalign, Kalignvu, and Mumsa
319
http://msa.cgb.ki.se/cgi-bin/msa.cgi
LigAlign
3
http://compbio.cs.toronto.edu/ligalign/
LogoBar
20
http://www.biosci.ki.se/groups/tbu/logobar/
LowComplexity
49
http://wwwmgs.bionet.nsc.ru/mgs/programs/low_complexity/
MaM
7
http://compbio.cs.sfu.ca/MAM.htm
MAVID
329
http://bio.math.berkeley.edu/mavid/download/
MIGenAS Toolkit
16
http://www.migenas.org/
MINER
69
http://coit-apple01.uncc.edu/MINER/
MONKEY
132
http://labs.csb.utoronto.ca/moses/monkey.html
MultiPhyl
106
http://www.cs.nuim.ie/distributed/multiphyl.php
One-Block CYRCA
225
http://bioinformatics.weizmann.ac.il/~milana/OneCYRCA/
PAL2NAL
245
http://coot.embl.de/pal2nal/
PARSESNP
62
http://www.proweb.org/parsesnp/
PASS2
0
http://caps.ncbs.res.in/pass2/
PDA
18
http://pda.uab.es/pda2/
Phydbac2
46
http://igs-server.cnrs-mrs.fr/phydbac/
PipeAlign
470
http://bips.u-strasbg.fr/PipeAlign/
PipMaker
1178
http://bio.cse.psu.edu/
PLecDom
6
http://www.nipgr.res.in/plecdom.html
PriFi
38
http://cgi-www.daimi.au.dk/cgi-chili/PriFi/main
Primaclade
57
http://www.umsl.edu/services/kellogg/primaclade.html
RNAz
950
http://rna.tbi.univie.ac.at/cgi-bin/RNAz.cgi
SAM - Sequence Assembly Manager
6
http://www.bcgsc.ca/platform/bioinfo/software/sam
SCR_FIND
4
http://schubert.bio.uniroma1.it/SCR_FIND/
SDPpred
59
http://bioinf.fbb.msu.ru/SDPpred/
Selectome
53
http://selectome.unil.ch/
Selecton
129
http://selecton.tau.ac.il/
Seq2Logo
N/A
http://www.cbs.dtu.dk/biotools/Seq2Logo
SeqFIRE
N/A
http://www.seqfire.org
Sequence Harmony
58
http://www.ibi.vu.nl/programs/seqharmwww/
Sequilab
N/A
http://www.sequilab.org
SHORE
N/A
http://1001genomes.org/downloads/shore.html
Staden Package
763
http://staden.sourceforge.net/
TreeDet
548
http://treedetv2.bioinfo.cnio.es/treedet/index.html
TreeSAAP
78
http://dna.cs.byu.edu/treesaap/
TSEMA
325
http://tsema.bioinfo.cnio.es/
VisCoSe
7
http://bio.math-inf.uni-greifswald.de/viscose/
VISTA
2504
http://genome.lbl.gov/vista/index.shtml
WebMAM
7
http://compbio.cs.sfu.ca/MAM.htm
WebProAnalyst
4
http://wwwmgs.bionet.nsc.ru/mgs/programs/panalyst/
WebScipio - eukaryotic gene identification
24
http://www.webscipio.org

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