Biochemical Features

The resources in this section include protein identification tools as well as tools which can give you information on the chemical structures and amino acid properties of peptide sequences.

Found 64 links

Displaying 64 links

TitleTypeCitation CountURL
AnalyCys
N/A
http://bioinformatics.univ-reunion.fr/analycys/
Ar_NHPred
4
http://www.imtech.res.in/raghava/ar_nhpred
BioMe
N/A
http://metals.zesoi.fer.hr
Calculation of protein isoelectric point
N/A
http://isoelectric.ovh.org/
CAPS-DB
0
http://www.bioinsilico.org/cgi-bin/CAPSDB/staticHTML/home
CBS DAS protein viewer
23
http://www.cbs.dtu.dk/cgi-bin/das
Cell++
19
http://sourceforge.net/projects/cellpp/
CharProtDB
1
http://www.jcvi.org/charprotdb/index.cgi/home
CHpredict
3
http://www.imtech.res.in/raghava/chpredict
CUPSAT
95
http://cupsat.uni-koeln.de/
DEPTH
2
http://mspc.bii.a-star.edu.sg/depth
DiANNA
89
http://bioinformatics.bc.edu/clotelab/DiANNA/
DISULFIND
252
http://disulfind.dsi.unifi.it/
eBioinformatics
N/A
http://www.ebioinformatics.org/
EMBOSS
2541
http://emboss.bioinformatics.nl/
eQuilibrator
5
http://equilibrator.weizmann.ac.il/
GDAP
24
http://www.doe-mbi.ucla.edu/Services/GDAP
H++
215
http://biophysics.cs.vt.edu/H++
H++ 3.0
N/A
http://biophysics.cs.vt.edu/
HELIQUEST
30
http://heliquest.ipmc.cnrs.fr
HotSpot Wizard
15
http://loschmidt.chemi.muni.cz/hotspotwizard/
IBM Bioinformatics and Pattern Discovery Group
714
http://cbcsrv.watson.ibm.com/Tspd.html
IC50-to-Ki
21
http://botdb.abcc.ncifcrf.gov/toxin/kiConverter.jsp
IEDB-AR
66
http://tools.immuneepitope.org
MASCOT (Matrix Science)
4486
http://www.matrixscience.com/
MODi
31
http://prix.uos.ac.kr/research.jsp
MolSurfer
50
http://projects.villa-bosch.de/dbase/molsurfer/
MONSTER
25
http://monster.northwestern.edu/
MPI Toolkit
81
http://toolkit.tuebingen.mpg.de
nextprot
N/A
http://www.nextprot.org/
NRSAS
2
http://www.receptors.org/NR/servers/html/
Onto-Tools
983
http://vortex.cs.wayne.edu/Projects.html
PBEQ-Solver
29
http://www.charmm-gui.org/?doc=input/pbeqsolver
PCE
32
http://bioserv.rpbs.jussieu.fr/Help/PCE.html
PDB2PQR Server
581
http://pdb2pqr.sourceforge.net/
PDB_Hydro
27
http://lorentz.immstr.pasteur.fr/solvate_mutate.php
PeptideMass
212
http://us.expasy.org/tools/peptide-mass.html
PHEMTO
8
http://phemto.orgchm.bas.bg/
PHEPS
13
http://pheps.orgchm.bas.bg/home.html
PI2PE
473
http://pipe.scs.fsu.edu/
pKD Server
178
http://enzyme.ucd.ie/cgi-bin/pKD/server_start.cgi
PROFEAT
84
http://bidd.cz3.nus.edu.sg/cgi-bin/prof/protein/profnew.cgi
ProMoST
54
http://proteomics.mcw.edu/promost.html
ProRepeat
2
http://prorepeat.bioinformatics.nl:443/dev/f?p=131:1:3958512077619968
ProSight PTM
237
http://prosightptm2.scs.uiuc.edu/
Protein Dipole Server
38
http://bioportal.weizmann.ac.il/dipol/
PROTOMAP
120
http://www.scripps.edu/chemphys/cravatt/protomap/
ProtParam
N/A
http://us.expasy.org/tools/protparam.html
PubChem BioAssay Service
171
http://pubchem.ncbi.nlm.nih.gov/assay/
Qgrid
5
http://www.netasa.org/qgrid/index.html
Rhea
1
http://www.ebi.ac.uk/rhea/
RNSC
275
http://www.cs.utoronto.ca/~juris/data/rnsc/
RosettaDesign
1600
http://rosettadesign.med.unc.edu
RPBS
852
http://bioserv.rpbs.jussieu.fr/
SCPSRM
30
http://www.moseslab.csb.utoronto.ca/alan/protein_motifs.html
SitEx
1
http://www-bionet.sscc.ru/sitex/
SLITHER
5
http://bioinfo.mc.ntu.edu.tw/slither/
STING Millenium
168
http://luna.bioc.columbia.edu/SMS/STINGm/
The Amino Acid Repository
N/A
http://www.imb-jena.de/IMAGE_AA.html
The Mendel Site
59
http://mendel.imp.ac.at/
The Sequence Manipulation Suite 2
209
http://bioinformatics.org/sms2/
UniPathway
5
http://www.unipathway.org/
WebProAnalyst
4
http://wwwmgs.bionet.nsc.ru/mgs/programs/panalyst/
Xwalk - Prediction, Validation and Visualisation of Chemical Cross-Link Data
3
http://www.xwalk.org

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