3-D Structure Retrieval/Viewing

Links to tools for visualization of 3D structures are found here. This section also contains links to many 3D structure databases.

Found 66 links

Displaying 66 links

TitleTypeCitation CountURL
3did
21
http://3did.irbbarcelona.org/
3DSS
32
http://cluster.physics.iisc.ernet.in/3dss/options.html
3Matrix
10
http://motif.stanford.edu/distributions/3matrix/
3Motif
20
http://motif.stanford.edu/distributions/3motif/
BSDD
1
http://iris.physics.iisc.ernet.in/bsdd/
CASTp
1616
http://sts.bioengr.uic.edu/castp/
CATH
197
http://www.biochem.ucl.ac.uk/bsm/cath_new/index.html
CBS DAS protein viewer
23
http://www.cbs.dtu.dk/cgi-bin/das
CD-Search
1547
http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi
Cell++
19
http://sourceforge.net/projects/cellpp/
Cn3D
194
http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml
Cognoscente
N/A
http://vanburenlab.medicine.tamhsc.edu/cognoscente.html
COLORADO-3D
50
http://asia.genesilico.pl/colorado3d/
COPS
14
http://cops.services.came.sbg.ac.at/
Crystallography Open Database
3
http://www.crystallography.net/
ElNemo
293
http://igs-server.cnrs-mrs.fr/elnemo/start.html
ENDscript
437
http://espript.ibcp.fr/ESPript/ENDscript/index.php
ePMV
N/A
http://epmv.scripps.edu/
FeatureMap3D
11
http://www.cbs.dtu.dk/services/FeatureMap3D/
FISH
6
http://max.ucmp.umu.se/sahmm/
GRAPE: GRaphical Abstracted Protein Explorer
6
http://grape.uwbacter.org
iSARST
6
http://sarst.life.nthu.edu.tw/iSARST/
JEvTrace
845
http://www.cmpharm.ucsf.edu/~marcinj/JEvTrace/
JOY
290
http://tardis.nibio.go.jp/cgi-bin/joy/joy.cgi
LigAlign
3
http://compbio.cs.toronto.edu/ligalign/
MinActionPath
21
http://lorentz.immstr.pasteur.fr/joel/index.php
MINER
69
http://coit-apple01.uncc.edu/MINER/
MMDB
165
http://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml
MolMovDB
136
http://molmovdb.org/
MolProbity
2881
http://molprobity.biochem.duke.edu/
MONSTER
25
http://monster.northwestern.edu/
Motif3D
12
http://umber.sbs.man.ac.uk/dbbrowser/motif3d/motif3d.html
MovieMaker
12
http://wishart.biology.ualberta.ca/moviemaker/
MRS
14
http://mrs.cmbi.ru.nl/
NAViGaTOR
44
http://ophid.utoronto.ca/navigator/
NCBI Structure Group
N/A
http://www.ncbi.nlm.nih.gov/Structure/
NRSAS
2
http://www.receptors.org/NR/servers/html/
OPM database
2
http://opm.phar.umich.edu/
Pigs
23
http://www.biocomputing.it/pigs/
PMG
6
http://bioserv.rpbs.jussieu.fr/~autin/cgi-bin/PMG
POLYVIEW-MM
52
http://polyview.cchmc.org/conform.html
POV-Ray
N/A
http://www.povray.org/
PPG
5
http://bioserv.rpbs.jussieu.fr/cgi-bin/PPG
Practical Structural Databases
N/A
http://xray.bmc.uu.se/embo/structdb/links.html
ProCKSI
794
http://www.procksi.net/
ProKware
1
http://ProKware.mbc.nctu.edu.tw/
ProSAT2
26
http://projects.villa-bosch.de/dbase/ps2/
ProteinDBS
21
http://proteindbs.rnet.missouri.edu/
PVS
10
http://imed.med.ucm.es/PVS/
PyRy3D: A software tool for modeling of large macromolecular complexes
N/A
http://genesilico.pl/pyry3d/
QSCOP - BLAST
16
http://qscop-blast.services.came.sbg.ac.at/
RasMol
2375
http://www.bernstein-plus-sons.com/software/rasmol/
RCSB Protein Data Bank
441
http://www.pdb.org
ReMus
22
http://140.121.196.30/remus.asp
RPBS
852
http://bioserv.rpbs.jussieu.fr/
SALAMI
6
http://www.zbh.uni-hamburg.de/salami
SCOP
5646
http://scop.mrc-lmb.cam.ac.uk/scop/
seeMotif
2
http://seemotif.csie.ntu.edu.tw
SEM
4
http://dicsoft2.physics.iisc.ernet.in/sem/
SNP@Domain
17
http://snpnavigator.net/
Structural Genomics of Histone Tail Recognition
4
http://apps.thesgc.org/resources/histone_tails/
SuperPose
157
http://wishart.biology.ualberta.ca/SuperPose/
Swiss-PdbViewer
7148
http://spdbv.vital-it.ch/
The European Bioinformatics Institute (EBI)
34
http://www.ebi.ac.uk
TopoGSA
11
http://www.topogsa.net
YASARA
N/A
http://www.yasara.org/

Associated Tag Cloud