3-D Structural Features

This section includes tools for searching for structural motifs, biochemical features found in protein structures, and functional sub-structures such as binding sites.

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Found 118 links

Displaying 118 links

Title	Citation Count	URL
3D-partner	27	http://3d-partner.life.nctu.edu.tw/
3DLigandSite	21	http://www.sbg.bio.ic.ac.uk/3dligandsite
3dLOGO	98	http://3dlogo.uniroma2.it/3dLOGO/home.html
3DTF	N/A	http://cogangs.biobase.de/3dtf/
3V	11	http://3vee.molmovdb.org
ALADYN	6	http://aladyn.escience-lab.org
AnalyCys	N/A	http://bioinformatics.univ-reunion.fr/analycys/
ANCHOR	12	http://structure.pitt.edu/anchor
Andrej Sali Lab	627	http://salilab.org/our_resources.shtml
ArchPred	26	http://manaslu.aecom.yu.edu/loopred/
BhairPred	45	http://www.imtech.res.in/raghava/bhairpred/
BioInfo3D	24	http://bioinfo3d.cs.tau.ac.il/
BioMe	N/A	http://metals.zesoi.fer.hr
BSDD	1	http://iris.physics.iisc.ernet.in/bsdd/
CAPS-DB	0	http://www.bioinsilico.org/cgi-bin/CAPSDB/staticHTML/home
CASTp	1616	http://sts.bioengr.uic.edu/castp/
CCRXP	3	http://ccrxp.netasa.org
CHC_FIND	4	http://schubert.bio.uniroma1.it/CHC_FIND/index.html
CisRegTest	9	http://www.moseslab.csb.utoronto.ca/alan/cis_reg_test.html
CMWeb	N/A	http://cmweb.enzim.hu
COFACTOR	N/A	http://zhanglab.ccmb.med.umich.edu/COFACTOR
COLORADO-3D	50	http://asia.genesilico.pl/colorado3d/
ConSeq	181	http://conseq.bioinfo.tau.ac.il/
ConSurf	1112	http://consurf.tau.ac.il/
Cpred	N/A	http://sarst.life.nthu.edu.tw/CPred
CSpritz	3	http://protein.bio.unipd.it/cspritz/
DBCP	7	http://120.107.8.16/dbcp
DR.Bind	N/A	http://dnasite.limlab.ibms.sinica.edu.tw
eF-seek	409	http://ef-site.hgc.jp/eF-seek/index.jsp
ET Report Maker	36	http://mammoth.bcm.tmc.edu/report_maker/
EVAcon	15	http://www.pdg.cnb.uam.es/eva/con/index.html
FeatureMap3D	11	http://www.cbs.dtu.dk/services/FeatureMap3D/
FF - Fragment Finder	8	http://cluster.physics.iisc.ernet.in/ff/
FoldMiner and LOCK 2	28	http://foldminer.stanford.edu/
Fpocket	15	http://bioserv.rpbs.univ-paris-diderot.fr/fpocket
Gene3D	3	http://gene3d.biochem.ucl.ac.uk/WebServices/
GlobPlot	481	http://globplot.embl.de/
Glyprot	62	http://www.glycosciences.de/modeling/glyprot/php/main.php
H++	215	http://biophysics.cs.vt.edu/H++
Harmony	13	http://caps.ncbs.res.in/harmony/
I2I-SiteEngine	62	http://bioinfo3d.cs.tau.ac.il/I2I-SiteEngine/
ICGEBnet Protein Tools	191	http://www.icgeb.org/protein/
iMOT	10	http://caps.ncbs.res.in/imot/iMOTserver.html
IntFOLD	9	http://www.reading.ac.uk/bioinf/IntFOLD/
KFC Server	29	http://www.mitchell-lab.org/kfc
KINARI-Web	8	http://kinari.cs.umass.edu/
KinDOCK	11	http://abcis.cbs.cnrs.fr/kindock/
KNOTS	127	http://knots.mit.edu/
MAPPIS	43	http://bioinfo3d.cs.tau.ac.il/MAPPIS
MCPep	N/A	http://bental.tau.ac.il/MCPep/
MolAxis	13	http://bioinfo3d.cs.tau.ac.il/MolAxis
MOLEonline 2.0	N/A	http://mole.upol.cz/
MolLoc	10	http://bcb.dei.unipd.it/MolLoc
MolSurfer	50	http://projects.villa-bosch.de/dbase/molsurfer/
MPlot	2	http://proteinformatics.charite.de/mplot/
MultiBind	43	http://bioinfo3d.cs.tau.ac.il/MultiBind
NNcon	28	http://casp.rnet.missouri.edu/nncon.html
NRSAS	2	http://www.receptors.org/NR/servers/html/
OPM database	2	http://opm.phar.umich.edu/
Paratome	N/A	http://www.ofranlab.org/paratome/
PAST	16	http://past.in.tum.de/
PBSword	N/A	http://pbs.rnet.missouri.edu
PCFamily	3	http://pcfamily.life.nctu.edu.tw
PDB2PQR Server	581	http://pdb2pqr.sourceforge.net/
pdbFun	32	http://pdbfun.uniroma2.it/
PDBSiteScan	63	http://wwwmgs.bionet.nsc.ru/mgs/systems/fastprot/pdbsitescan.html
PDB_Hydro	27	http://lorentz.immstr.pasteur.fr/solvate_mutate.php
PFP	127	http://pfp.technion.ac.il/
PHEMTO	8	http://phemto.orgchm.bas.bg/
PHEPS	13	http://pheps.orgchm.bas.bg/home.html
Phosfinder	1	http://phosfinder.bio.uniroma2.it
PI2PE	473	http://pipe.scs.fsu.edu/
PIC	88	http://crick.mbu.iisc.ernet.in/~PIC/
PINTS	277	http://www.russell.embl.de/pints/
pKD Server	178	http://enzyme.ucd.ie/cgi-bin/pKD/server_start.cgi
pKNOT-v2	17	http://pknot.life.nctu.edu.tw/
PocketQuery	N/A	http://pocketquery.csb.pitt.edu
POLYVIEW-MM	52	http://polyview.cchmc.org/conform.html
POPS	114	http://mathbio.nimr.mrc.ac.uk/wiki/POPS
PreBI	77	http://pre-s.protein.osaka-u.ac.jp/prebi/
PREDITOR	76	http://wishart.biology.ualberta.ca/shiftor/cgi-bin/preditor_current.py
ProBiS	18	http://probis.cmm.ki.si
PROFEAT	84	http://bidd.cz3.nus.edu.sg/cgi-bin/prof/protein/profnew.cgi
ProFunc	267	http://www.ebi.ac.uk/thornton-srv/databases/ProFunc/
ProKware	1	http://ProKware.mbc.nctu.edu.tw/
ProMateus	251	http://bioportal.weizmann.ac.il/promate/
ProSAT2	26	http://projects.villa-bosch.de/dbase/ps2/
ProSMoS	6	http://prodata.swmed.edu/ProSMoS/
ProtChemSI	1	http://pcidb.russelllab.org/
Protein Dipole Server	38	http://bioportal.weizmann.ac.il/dipol/
Protein Frustratometer	N/A	http://lfp.qb.fcen.uba.ar/embnet/charge.php?app=Frustratometer&chains=NO
Protein Peeling 3 D	26	http://www.dsimb.inserm.fr/dsimb_tools/peeling3/
Protemot	16	http://protemot.csbb.ntu.edu.tw/
PSCDB	1	http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/
RASMOT-3D PRO	5	http://biodev.extra.cea.fr/rasmot3d/
RCI	48	http://wishart.biology.ualberta.ca/rci/cgi-bin/rci_cgi_1_d.py
ReadOut	318	http://gibk26.bio.kyutech.ac.jp/jouhou/readout/
RHYTHM	5	http://proteinformatics.charite.de/rhythm/
RNAcontext	9	http://www.cs.toronto.edu/~hilal/rnacontext/
RNSC	275	http://www.cs.utoronto.ca/~juris/data/rnsc/
SBSPKS	14	http://www.nii.ac.in/sbspks.html
SCit	16	http://bioserv.rpbs.jussieu.fr/cgi-bin/SCit
SCRATCH	295	http://www.igb.uci.edu/servers/psss.html
SDM	7	http://www-cryst.bioc.cam.ac.uk/~sdm/sdm.php
seeMotif	2	http://seemotif.csie.ntu.edu.tw
SiteEngine	51	http://bioinfo3d.cs.tau.ac.il/SiteEngine/
SITEHOUND-web	21	http://sitehound.sanchezlab.org
SLITHER	5	http://bioinfo.mc.ntu.edu.tw/slither/
SMAP-WS	10	http://kryptonite.ucsd.edu/opal2/GetServicesList.do
SplitPocket	10	http://pocket.uchicago.edu/
SPRITE	N/A	http://mfrlab.org/grafss/sprite
Sride	67	http://sride.enzim.hu/
STING Millenium	168	http://luna.bioc.columbia.edu/SMS/STINGm/
StSNP	18	http://ilyinlab.org/StSNP/
SuperLooper	20	http://bioinf-applied.charite.de/superlooper/
SWAKK	16	http://oxytricha.princeton.edu/SWAKK/
TopMatch	62	http://topmatch.services.came.sbg.ac.at/
WebFEATURE	121	http://feature.stanford.edu/webfeature/

3-D Structural Features

Found 118 links

Displaying 118 links

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