2-D Structure Prediction

This sections contains links to several programs which predict protein secondary structure. A link to resources for the evaluation of protein structure prediction is also found here.

Found 77 links

Displaying 77 links

TitleTypeCitation CountURL
3D-Jury
775
http://meta.bioinfo.pl/submit_wizard.pl
Align-GVGD
N/A
http://agvgd.iarc.fr/agvgd_input.php
AlignMe
N/A
http://www.bioinfo.mpg.de/AlignMe
AlphaPred
39
http://www.imtech.res.in/raghava/alphapred/
BetaTPred
17
http://www.imtech.res.in/raghava/betatpred/
BetatPred2
94
http://www.imtech.res.in/raghava/betatpred2/
Betaturns
59
http://www.imtech.res.in/raghava/betaturns/
BhairPred
45
http://www.imtech.res.in/raghava/bhairpred/
Bioinformatics Toolkit
N/A
http://toolkit.tuebingen.mpg.de/
Bioverse
95
http://bioverse.compbio.washington.edu/
BOMP
85
http://www.bioinfo.no/tools/bomp
BPROMPT
37
http://www.ddg-pharmfac.net/bprompt/BPROMPT/BPROMPT.html
CBS DAS protein viewer
23
http://www.cbs.dtu.dk/cgi-bin/das
COILS
2781
http://www.ch.embnet.org/software/COILS_form.html
DICHROWEB
1095
http://dichroweb.cryst.bbk.ac.uk/html/home.shtml
DisEMBL
506
http://dis.embl.de/
DSP
N/A
http://cheminfo.tongji.edu.cn/dsp/
DSSPcont
60
http://cubic.bioc.columbia.edu/services/DSSPcont/
DynaMine
N/A
http://dynamine.ibsquare.be
ENDscript 2.0
437
http://espript.ibcp.fr/ESPript/ENDscript/index.php
EVA
448
http://cubic.bioc.columbia.edu/eva/
GAMMAPRED
56
http://www.imtech.res.in/raghava/gammapred/
GlobPlot
481
http://globplot.embl.de/
HHrep
29
http://toolkit.tuebingen.mpg.de/hhrep
IBM Bioinformatics and Pattern Discovery Group
714
http://cbcsrv.watson.ibm.com/Tspd.html
Institute of Enzymology Servers
2004
http://www.enzim.hu/index.php?option=com_content&task=blogcategory&id=30&Itemid=92
iPDA
82
http://biominer.bime.ntu.edu.tw/ipda/
Jpred 3
466
http://www.compbio.dundee.ac.uk/jpred
LiveBench
367
http://meta.bioinfo.pl/livebench.pl
Localizome
26
http://localodom.kobic.re.kr/LocaloDom/
LocalMove
4
http://bioinformatics.bc.edu/clotelab/localmove/
Meta-BASIC
85
http://basic.bioinfo.pl/
MIGenAS Toolkit
16
http://www.migenas.org/
MPI Toolkit
81
http://toolkit.tuebingen.mpg.de
NAViGaTOR
44
http://ophid.utoronto.ca/navigator/
NetCSSP
4
http://cssp2.sookmyung.ac.kr
NORSp
251
http://cubic.bioc.columbia.edu/services/NORSp/
OpenHUSAR
7
http://genius.embnet.dkfz-heidelberg.de/menu/cgi-bin/w2h-open/w2h.open/w2h.startthis?SIMGO=w2h.welcome
Pcons.net
253
http://pcons.net/
Phobius
863
http://phobius.sbc.su.se/
PONGO
73
http://pongo.biocomp.unibo.it/
PRALINE
382
http://ibivu.cs.vu.nl/programs/pralinewww/
PrDOS
72
http://prdos.hgc.jp/cgi-bin/top.cgi
PRED-TMBB
255
http://bioinformatics.biol.uoa.gr/PRED-TMBB/
PredictProtein
1016
http://www.predictprotein.org
PredictProtein - Sequence Analysis, Structure and Function Prediction
993
http://www.predictprotein.org/
PROFEAT
84
http://bidd.cz3.nus.edu.sg/cgi-bin/prof/protein/profnew.cgi
PROFtmb
153
http://cubic.bioc.columbia.edu/services/proftmb/
ProSMoS
6
http://prodata.swmed.edu/ProSMoS/
PROSPECT-PSPP
24
http://csbl.bmb.uga.edu/protein_pipeline
Protein Peeling 3 D
26
http://www.dsimb.inserm.fr/dsimb_tools/peeling3/
Protinfo
91
http://protinfo.compbio.washington.edu/
PSA
324
http://bmerc-www.bu.edu/psa/request.htm
PSIPRED
4265
http://bioinf.cs.ucl.ac.uk/psipred/
RbDe
47
http://icb.med.cornell.edu/crt/RbDe/index.xml
RBPmotif
N/A
http://www.rnamotif.org
SAPS - Statistical Analysis of Protein Sequences
342
http://www.ebi.ac.uk/Tools/saps/
SARpred
50
http://www.imtech.res.in/raghava/sarpred/
SCRATCH
295
http://www.igb.uci.edu/servers/psss.html
Services from Zhou Laboratory
1058
http://cssb.biology.gatech.edu/skolnick/people/zhou.html
SNPeffect
1
http://snpeffect.switchlab.org/
SOSUI WWW Server
1211
http://bp.nuap.nagoya-u.ac.jp/sosui/
Spritz
303
http://distill.ucd.ie/spritz/
SSEP
11
http://cluster.physics.iisc.ernet.in/ssep/options.html
STRIDE
144
http://webclu.bio.wzw.tum.de/stride/
SVMtm
53
http://ccb.imb.uq.edu.au/svmtm/svmtm_predictor.shtml
TMB-Hunt
45
http://bmbpcu36.leeds.ac.uk/~andy/betaBarrel/AACompPred/aaTMB_Hunt.cgi
TMBETA-NET
99
http://psfs.cbrc.jp/tmbeta-net/
TMH Benchmark
251
http://cubic.bioc.columbia.edu/services/tmh_benchmark/
TMpred
N/A
http://www.ch.embnet.org/software/TMPRED_form.html
TOPCONS
62
http://topcons.net
TRAMPLE
984
http://gpcr.biocomp.unibo.it/biodec/
transFold
17
http://bioinformatics.bc.edu/clotelab/transFold
VADAR
189
http://redpoll.pharmacy.ualberta.ca/vadar/
ValiDichro
N/A
http://valispec.cryst.bbk.ac.uk/circularDichroism/ValiDichro/upload.html
VAST
N/A
http://www.ncbi.nlm.nih.gov/Structure/VAST/vast.shtml
xREI
1
http://biowiki.org/XreiProgram

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