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Open Access Resources

Links to literature resources that are freely available to all.

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BioPortalDatabase Content

http://bioportal.bioontology.org [open in a new window]

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DNA > Annotations
Expression > Transcript Expression Analysis
Human Genome > Annotations
Literature > Open Access Resources
Literature > Search Tools

BioPortal is a web accessible open repository of biomedical ontologies. Users may browse, search and visualize ontologies, as well as participate in the evaluation and evolution of ontology reviews by adding notes, corrections, reviews, etc. Data from other sources such as GEO, ClinicalTrials.gov and ArrayExpress may also be integrated with the ontologies.

This content is being maintained by whetzel.

links directory index: 191
TitlePublication YearGoogle Scholar Citation Count
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications201111
BioPortal: ontologies and integrated data resources at the click of a mouse2009180
NAR Web Server Issue 2009NAR Web Server Issue 2011
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CCancerDatabase Content

http://mips.helmholtz-muenchen.de/proj/ccancer [open in a new window]

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Expression > Gene Set Analysis
Literature > Open Access Resources

CCancer is an automatically collected database of gene lists reported in various studies. The current coverage is 3369 gene lists from 2644 papers. Enrichment analysis reports intersecting gene lists with an inputted gene list.

links directory index: 7
TitlePublication YearGoogle Scholar Citation Count
CCancer: a bird's eye view on gene lists reported in cancer-related studies20107
NAR Web Server Issue 2010
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Directory of Open Access JournalsDatabase Content

http://www.doaj.org/ [open in a new window]

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Literature > Open Access Resources

The Directory of Open Access Journals provides a listing of open-access journals and a searchable database of article abstracts from them. It aims to incorporate journals from all subjects and languages.

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TitlePublication YearGoogle Scholar Citation Count
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Public Library of ScienceResource Content

http://www.plos.org/ [open in a new window]

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Literature > Open Access Resources

The Public Library of Science (PLoS) is a non-profit organization of scientists and physicians committed to making the world\'s scientific and medical literature a freely available public resource.

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