Annotations

This section contains tools and links related to genome annotation. Different sites provide automated and curated annotations. See also DNA:Gene Prediction, DNA: Sequence Features.

Found 81 links

Displaying 15 links

agriGOTool Content

Share This Link

agriGO is an integrated gene ontology analysis toolkit for the agriculture community. Supported organisms and gene identifiers were expanded over EasyGO tool, and several tools for predicting gene function are included.

links directory index: 63
TitlePublication YearGoogle Scholar Citation Count
agriGO: a GO analysis toolkit for the agricultural community201063

AnnotQTLTool Content

Share This Link

AnnotQTL is a web tool for gathering functional and comparative information on a genomic region. It is designed to aggregate functional annotations from different websites by minimizing the redundancy of the information.

antiSMASH 2.0Tool Content

Share This Link

The antibiotic and Secondary Metabolite Analysis Shell (antiSMASH) is a resource for identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. antiSMASH 2.0 now supports input of multiple related sequences simultaneously.

Apollo Genome Annotation and Curation ToolTool Content

Share This Link

Apollo is a genome annotation viewer and editor. Apollo allows researchers to explore genomic annotations at many levels of detail, and to perform expert annotation curation, all in a graphical environment.

This content is being maintained by suzi.

links directory index: 279
TitlePublication YearGoogle Scholar Citation Count
Apollo: a sequence annotation editor2002279

ArtemisTool Content

Share This Link

DNA sequence viewer and annotation tool; allows visualization of sequence features and results of analyses within the context of the sequence and its 6-frame translation; available for UNIX, Windows and Macintosh.

ASAPDatabase Content

Share This Link

ASAP (a systematic annotation package for community analysis of genomes) is a relational database and web interface developed to store, update and distribute genome sequence data and functional characterization. ASAP supports three levels of users: public viewers, annotators and curators.

BabelomicsTool Content

Share This Link

Babelomics is a suite of web tools for the functional annotation and analysis of groups of genes in high throughput experiments. Tools include: FatiGO, FatiGOplus, Fatiscan, Gene Set Enrichment Analysis (GSEA), Marmite, and the Tissues Mining Tool (TMT). Other tools include Biocarta pathways, Transfac and a tool de novo functional annotation of sequences.

This content is being maintained by juan_aguilar.

BankItTool Content

Share This Link

Web-based submission of one or a few sequences to GenBank.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

BASysTool Content

Share This Link

BASys (Bacterial Annotation System) is a tool for automated annotation of bacterial genomic (chromosomal and plasmid) sequences including gene/protein names, GO functions, COG functions, possible paralogues and orthologues, molecular weights, isoelectric points, operon structures, subcellular localization, signal peptides, transmembrane regions, secondary structures, 3-D structures, reactions, and pathways.

This content is being maintained by gary.vandomselaar@gmail.com.

BeeSpace NavigatorTool Content

Share This Link

BeeSpace Navigator is a tool for exploratory analysis of gene function using biological literature. It is an automated version of the curation process to extract gene function.

Bioinformatics ToolkitTool Content

Share This Link

This Toolkit is a collection of a wide range of tools and links for sequence analysis, function, and structure prediction. This resource offers convienent web interfaces for many freely available tools.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count

BioPortalDatabase Content

Share This Link

BioPortal is a web accessible open repository of biomedical ontologies. Users may browse, search and visualize ontologies, as well as participate in the evaluation and evolution of ontology reviews by adding notes, corrections, reviews, etc. Data from other sources such as GEO, ClinicalTrials.gov and ArrayExpress may also be integrated with the ontologies.

This content is being maintained by whetzel.

user feedback
0
external linksLink on Twitter

Blast2GOTool Content

Share This Link

The Blast2GO suite is a comprehensive bioinformatics tool for functional annotation of plant sequences and data mining on the resulting annotations, primarily based on the gene ontology (GO) vocabulary. The application supports InterPro, enzyme codes, KEGG pathways, GO direct acyclic graphs (DAGs), and GOSlim.

links directory index: not available
TitlePublication YearGoogle Scholar Citation Count
user feedback
0
external linksLink on Twitter

Associated Tag Cloud