Annotations

This section contains tools and links related to genome annotation. Different sites provide automated and curated annotations. See also DNA:Gene Prediction, DNA: Sequence Features.

Found 81 links

Displaying 81 links

TitleTypeCitation CountURL
agriGO
63
http://bioinfo.cau.edu.cn/agriGO/
AnnotQTL
1
http://annotqtl.genouest.org
antiSMASH 2.0
19
http://antismash.secondarymetabolites.org
Apollo Genome Annotation and Curation Tool
279
http://apollo.berkeleybop.org
Artemis
1577
http://www.sanger.ac.uk/Software/Artemis/
ASAP
45
https://asap.ahabs.wisc.edu/asap/home.php
Asterias
555
http://asterias.bioinfo.cnio.es/
Babelomics
1271
http://www.babelomics.org
BankIt
N/A
http://www.ncbi.nlm.nih.gov/BankIt/
BASys
78
http://basys.ca
BeeSpace Navigator
0
http://www.beespace.illinois.edu
Bioinformatics Toolkit
N/A
http://toolkit.tuebingen.mpg.de/
BioPortal
191
http://bioportal.bioontology.org
Bioverse
95
http://bioverse.compbio.washington.edu/
Blast2GO
N/A
http://www.blast2go.org/
CARGO
18
http://cargo2.bioinfo.cnio.es/docs/aboutCargo.html
CDSbank
N/A
http://hazeslab.med.ualberta.ca/CDSbank/
DAVID Bioinformatics Resources
3468
http://david.abcc.ncifcrf.gov/home.jsp
DGIdb - Mining the Druggable Genome
N/A
http://dgidb.genome.wustl.edu/
DMINDA
N/A
http://csbl.bmb.uga.edu/DMINDA/
DNannotator
14
http://bioapp.psych.uic.edu/DNannotator.htm
Ensembl Genome Browser
4071
http://www.ensembl.org/
ESTExplorer
166
http://estexplorer.biolinfo.org
EUGENE'HOM
37
http://genopole.toulouse.inra.fr/bioinfo/eugene/EuGeneHom/cgi-bin/EuGeneHom.pl
FatiGOplus
1322
http://www.fatigo.org/
FeatureExtract
8
http://www.cbs.dtu.dk/services/FeatureExtract/
g:Profiler
120
http://biit.cs.ut.ee/gprofiler/
GBrowse
727
http://gmod.org/wiki/Gbrowse
Gendoo
5
http://gendoo.dbcls.jp
GeneCodis3
71
http://genecodis.dacya.ucm.es
GeneTrail
112
http://genetrail.bioinf.uni-sb.de/index.php
GoGene
14
http://gopubmed.biotec.tu-dresden.de/gogene
GONUTS
1
http://gowiki.tamu.edu/wiki/index.php/Main_Page
HaploReg
6
http://www.broadinstitute.org/mammals/haploreg/haploreg.php
IBM Bioinformatics and Pattern Discovery Group
714
http://cbcsrv.watson.ibm.com/Tspd.html
INDELSCAN
2
http://indelscan.genomics.sinica.edu.tw/IndelScan/
INTEGRALL
N/A
http://integrall.bio.ua.pt/
Integrated Microbial Genomes (IMG)
110
http://img.jgi.doe.gov/
InterProScan
1944
http://www.ebi.ac.uk/InterProScan/
IslandPath
100
http://www.pathogenomics.sfu.ca/islandpath/
JGI Genome Portal
0
http://genome.jgi.doe.gov/
KAAS
168
http://www.genome.jp/kegg/kaas/
KOBAS
215
http://kobas.cbi.pku.edu.cn
LTR_Finder
68
http://tlife.fudan.edu.cn/ltr_finder/
Lynx
N/A
http://lynx.ci.uchicago.edu/webservices.html
MADAP
90
http://ccg.vital-it.ch/madap/
MagicViewer
9
http://bioinformatics.zj.cn/magicviewer/
MartView
376
http://www.biomart.org/biomart/martview/
MICheck
15
http://www.genoscope.cns.fr/agc/tools/micheck/
MutDB
64
http://www.mutdb.org/
NCBI Influenza Virus Sequence Annotation Tool
12
http://www.ncbi.nlm.nih.gov/genomes/FLU/Database/annotation.cgi
NCBI Map Viewer
591
http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi?
Onto-Tools
983
http://vortex.cs.wayne.edu/Projects.html
Ontology Lookup Service
160
http://www.ebi.ac.uk/ols
ORegAnno
0
http://www.oreganno.org/
PANDORA
1
http://www.pandora.cs.huji.ac.il
PANTHER Tools
1278
http://www.pantherdb.org/tools/
Pegasys: workflow management for bioinformatics
79
http://www.bioextract.org/query/index.jsp
PHAST
3
http://phast.wishartlab.com/
PhenoHM
8
http://phenome.cchmc.org
Phyloscan
4
http://bayesweb.wadsworth.org/phyloscan/
Pre Ensembl
98
http://pre.ensembl.org/index.html
RNAmmer
299
http://www.cbs.dtu.dk/services/RNAmmer/
RTAnalyzer
6
http://www.riboclub.org/cgi-bin/RTAnalyzer/index.pl?page=rt_find
Sequin
N/A
http://www.ncbi.nlm.nih.gov/Sequin/index.html
SigReannot-mart
3
http://sigreannot-mart.toulouse.inra.fr/biomart/martview/430b028768948e41c781761b26ba2cc6
SOBA: Sequence Ontology Bioinformatics Analysis
2
http://www.sequenceontology.org/cgi-bin/soba.cgi
Sockeye
N/A
http://www.bcgsc.ca/gc/bomge/sockeye/
SortMeRNA : ribosomal RNA reads filter for metatranscriptomic dataa
N/A
http://bioinfo.lifl.fr/RNA/sortmerna/
TACT
307
http://jbirc.jbic.or.jp/tact/
TargetIdentifier
26
http://proteomics.ysu.edu/tools/TargetIdentifier.html
The Chromosome 7 Annotation Project
N/A
http://www.chr7.org/
TIGR Software Tools
56
http://www.tigr.org/software/
TogoTable
N/A
http://togotable.dbcls.jp/
UCSC Human Genome Browser Gateway
1185
http://genome.ucsc.edu/cgi-bin/hgGateway?org=Human&db=0&hgsid=27735471
Ulysses
28
http://www.cisreg.ca:8080/ulysses/
VarioWatch
10
http://genepipe.ncgm.sinica.edu.tw/variowatch/main.do
VIRGO
237
http://whipple.cs.vt.edu/virgoperl/welcome.cgi
WebGestalt
324
http://bioinfo.vanderbilt.edu/webgestalt/
WEGO
116
http://wego.genomics.org.cn/cgi-bin/wego/index.pl
WordCloud Cytoscape Plugin
2
http://baderlab.org/Software/WordCloudPlugin

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